mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.6% | 21.4 / 11.9 | 19 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3669833 = | 66 (1.940) | 3 (0.090) | 3/402 | 3.9 | 4.4% | coding (242/1650 nt) | treF | cytoplasmic trehalase |
| ? | NC_000913 | 3669886 = | 66 (2.000) | coding (295/1650 nt) | treF | cytoplasmic trehalase | |||||
| * | ? | NC_000913 | = 1682479 | 25 (0.730) | 3 (0.090) | 3/396 | 3.9 | 8.7% | coding (321/720 nt) | rstA | DNA‑binding transcriptional regulator RstA |
| ? | NC_000913 | = 3056277 | 39 (1.200) | coding (37/549 nt) | fau | putative 5‑formyltetrahydrofolate cyclo‑ligase | |||||
| * | ? | NC_000913 | = 3617338 | 43 (1.260) | 3 (0.090) | 3/414 | 4.0 | 6.5% | coding (324/765 nt) | nikD | Ni(2(+)) ABC transporter ATP binding subunit NikD |
| ? | NC_000913 | 3617349 = | 44 (1.290) | coding (335/765 nt) | nikD | Ni(2(+)) ABC transporter ATP binding subunit NikD | |||||