New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 294583 =221 (1.220)6 (0.030) 6/184 13.4 2.7% coding (221/441 nt) yagN hypothetical protein
?NC_000913 = 2065375 217 (1.200)intergenic (‑32/‑1255) trs56/b1995 IS5 transposase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 224 total aligned reads displayed.

AATCTGATGATAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGTTCCTTTGAGA  >  NC_000913/294491‑294675
                                                                                            |                                                                                            
  tCTGATGATAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTta                                                                                            >  1:2920112/1‑93 (MQ=255)
   cTGATGATAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTtag                                                                                           <  1:682478/93‑1 (MQ=255)
    tgatgaTAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTtagt                                                                                          <  2:1597272/93‑1 (MQ=255)
    tgatgaTAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTtagt                                                                                          <  2:4537931/93‑1 (MQ=255)
     gatgatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTtagta                                                                                         <  1:1101590/93‑1 (MQ=255)
     gatgatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTtagta                                                                                         >  1:2764740/1‑93 (MQ=255)
     gatgatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTtagta                                                                                         <  2:3034665/93‑1 (MQ=255)
       tgatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGc                                                                                       >  1:512249/1‑93 (MQ=255)
       tgatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGc                                                                                       >  1:185876/1‑93 (MQ=255)
       tgatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGc                                                                                       <  2:4176141/93‑1 (MQ=255)
        gatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCa                                                                                      <  2:1132354/93‑1 (MQ=255)
        gatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCa                                                                                      <  2:3864921/93‑1 (MQ=255)
        gatAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCa                                                                                      <  1:2301906/93‑1 (MQ=255)
          tAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCAtt                                                                                    >  2:830584/1‑93 (MQ=255)
          tAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCAtt                                                                                    <  2:2058711/93‑1 (MQ=255)
            aGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTATATGACATCAGACGCGCGAGAAAGTTAGTAGCAtttt                                                                                  >  1:1373938/1‑93 (MQ=255)
            aGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCAtttt                                                                                  >  1:978004/1‑93 (MQ=255)
            aGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCAtttt                                                                                  <  2:1627713/93‑1 (MQ=255)
             ggCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTg                                                                                 >  1:2325903/1‑93 (MQ=255)
               cACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCa                                                                               <  1:2346873/93‑1 (MQ=255)
                aCTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCAt                                                                              >  1:2041939/1‑93 (MQ=255)
                aCTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCAt                                                                              >  2:1013132/1‑93 (MQ=255)
                aCTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCAt                                                                              >  2:2813854/1‑93 (MQ=255)
                aCTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCAt                                                                              <  1:222586/93‑1 (MQ=255)
                 cTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCAtt                                                                             <  1:4201985/93‑1 (MQ=255)
                  ttttAGCTGATTTAGGCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTc                                                                            <  2:2970662/93‑1 (MQ=255)
                    ttAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCtt                                                                          <  2:2429066/93‑1 (MQ=255)
                    ttAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCtt                                                                          >  2:1504976/1‑93 (MQ=255)
                     tAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCttt                                                                         >  2:1207818/1‑93 (MQ=255)
                     tAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCttt                                                                         <  1:3212163/93‑1 (MQ=255)
                      aGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTg                                                                        <  2:394854/93‑1 (MQ=255)
                      aGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTg                                                                        >  2:3075061/1‑93 (MQ=255)
                      aGCTGATTTAGCCGTACTGTGATGCGATCGGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTg                                                                        <  1:31859/93‑1 (MQ=255)
                       gCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGt                                                                       >  1:48606/1‑93 (MQ=255)
                       gCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGt                                                                       >  2:2706966/1‑93 (MQ=255)
                       gCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGt                                                                       >  1:1605619/1‑93 (MQ=255)
                        cTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGtt                                                                      <  2:4634715/93‑1 (MQ=255)
                         tGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTCCATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGttt                                                                     >  1:435140/1‑93 (MQ=255)
                          gATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTa                                                                    <  1:1247607/93‑1 (MQ=255)
                          gATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTa                                                                    >  1:4316662/1‑93 (MQ=255)
                           aTTTAGCCGTACTGTGATTCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTaa                                                                   <  2:2104131/93‑1 (MQ=255)
                              tAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGAt                                                                >  2:4326885/1‑93 (MQ=255)
                                 ccGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTa                                                             <  2:4250215/93‑1 (MQ=255)
                                  cGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaa                                                            >  1:1784327/1‑93 (MQ=255)
                                   gTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaaa                                                           >  2:2915371/1‑93 (MQ=255)
                                   gTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaaa                                                           >  1:1050806/1‑93 (MQ=255)
                                   gTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaaa                                                           <  1:4414351/93‑1 (MQ=255)
                                   gTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaaa                                                           >  1:3366099/1‑93 (MQ=255)
                                   gTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaaa                                                           >  1:1981168/1‑93 (MQ=255)
                                    tACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaaaa                                                          <  1:87240/93‑1 (MQ=255)
                                    tACTGTGATCCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTaaaa                                                          <  1:2115347/93‑1 (MQ=255)
                                      cTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAAtt                                                        >  2:761162/1‑93 (MQ=255)
                                      cTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAAtt                                                        <  1:2719654/93‑1 (MQ=255)
                                        gtgATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAAtttt                                                      <  2:4052469/93‑1 (MQ=255)
                                        gtgATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAAtttt                                                      <  2:1816474/93‑1 (MQ=255)
                                         tgATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTc                                                     <  1:4672008/93‑1 (MQ=255)
                                          gATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCa                                                    <  1:4011871/93‑1 (MQ=255)
                                          gATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCa                                                    >  1:2492795/1‑93 (MQ=255)
                                           aTGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAg                                                   <  1:1637542/93‑1 (MQ=255)
                                            tGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGt                                                  <  2:3789444/93‑1 (MQ=255)
                                            tGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGt                                                  >  1:131775/1‑93 (MQ=255)
                                             gCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGtt                                                 <  1:2734110/93‑1 (MQ=255)
                                              cGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTGGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGttt                                                <  2:1391280/93‑1 (MQ=255)
                                              cGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTGGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGttt                                                <  2:4525944/93‑1 (MQ=255)
                                              cGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGttt                                                <  2:3625744/93‑1 (MQ=255)
                                                aTCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTgg                                              <  2:3350821/93‑1 (MQ=255)
                                                    ggATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCa                                          >  1:2013015/1‑93 (MQ=255)
                                                    ggATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCa                                          <  1:3560074/93‑1 (MQ=255)
                                                     gATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCAt                                         <  2:1788088/93‑1 (MQ=255)
                                                     gATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCAt                                         <  2:713492/93‑1 (MQ=255)
                                                      aTGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTAAGTTTGGCGCATg                                        <  1:2997579/93‑1 (MQ=255)
                                                       tGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGc                                       >  2:4066962/1‑93 (MQ=255)
                                                       tGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGc                                       <  1:3908939/93‑1 (MQ=255)
                                                       tGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGc                                       >  2:133079/1‑93 (MQ=255)
                                                        gCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCg                                      >  2:3144351/1‑93 (MQ=255)
                                                        gCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCg                                      >  1:3268496/1‑93 (MQ=255)
                                                           tGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGCTGAAAAATTTTCAGTTTGGCGCATGCGACa                                   >  1:3177631/1‑93 (MQ=255)
                                                           tGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACa                                   <  1:4047483/93‑1 (MQ=255)
                                                           tGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACa                                   <  1:3680816/93‑1 (MQ=255)
                                                                     aTGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGaa                         <  2:852978/93‑1 (MQ=255)
                                                                     aTGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGaa                         >  1:3982205/1‑93 (MQ=255)
                                                                     aTGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGaa                         <  1:4277250/93‑1 (MQ=255)
                                                                     aTGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGaa                         >  2:219267/1‑93 (MQ=255)
                                                                      tGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAag                        <  1:275539/93‑1 (MQ=255)
                                                                         cATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGc                     <  2:3683364/93‑1 (MQ=255)
                                                                          aTCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCt                    >  1:4262284/1‑93 (MQ=255)
                                                                           tCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTg                   <  1:2621576/93‑1 (MQ=255)
                                                                             aGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAg                 >  2:3487360/1‑93 (MQ=255)
                                                                               aCGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTa               <  1:1763311/93‑1 (MQ=255)
                                                                                cgcgcgAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTAt              <  2:1971872/93‑1 (MQ=255)
                                                                                cgcgcgAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTAt              <  2:3175282/93‑1 (MQ=255)
                                                                                 gcgcgAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATg             >  2:2960952/1‑93 (MQ=255)
                                                                                    cgAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGTTc          >  1:2174780/1‑93 (MQ=255)
                                                                                     gagaAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGTTcc         >  2:4303934/1‑93 (MQ=255)
                                                                                      agaAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGTTCCt        >  2:2503169/1‑93 (MQ=255)
                                                                                      agaAAGCTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGCTCCt        >  2:91059/1‑93 (MQ=255)
                                                                                       gaAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGTTCCtt       >  1:4625898/1‑93 (MQ=255)
                                                                                           gTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGTTCCTTTgag   <  2:1719338/93‑1 (MQ=255)
                                                                                           gTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGATCCTTTgag   >  1:613957/1‑93 (MQ=255)
                                                                                            ttAGTAGCATTGTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGGCTTGCGAAGAGCTGAGTATGTTCCTTTgaca  <  2:3291126/93‑3 (MQ=255)
                                                                                            |                                                                                            
AATCTGATGATAAGGCACTTTTAGCTGATTTAGCCGTACTGTGATGCGATCTGGATGCCTGATTTTTACATGACATCAGACGCGCGAGAAAGTTAGTAGCATTTTGCATTCTTTGTTTAAGATGTAAAATTTTCAGTTTGGCGCATGCGACAGACTTGCGAAGAGCTGAGTATGTTCCTTTGAGA  >  NC_000913/294491‑294675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.