BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	294583 =	221 (1.220)	6 (0.030)	6/184	13.4	2.7%	coding (221/441 nt)	yagN	hypothetical protein
*	?	NC_000913	= 2065375	217 (1.200)	6 (0.030)	6/184	13.4	2.7%	intergenic (‑32/‑1255)	trs56/b1995	IS5 transposase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 219 total aligned reads displayed.

CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGATGTT  >  NC_000913/2065283‑2065467

cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTcc                                                                                              >  1:3605249/1‑93 (MQ=18)

 ggCGAATGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTccc                                                                                             <  2:1410209/93‑1 (MQ=21)

   cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTa                                                                                           <  2:66503/93‑1 (MQ=37)

   cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTa                                                                                           <  2:191873/93‑1 (MQ=37)

    taaGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGATTTGCTCGCACCTACCCTat                                                                                          >  2:4220231/2‑92 (MQ=14)

    gAAGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAg                                                                                          >  1:3381065/1‑93 (MQ=38)

    gAAGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAg                                                                                          >  1:2309576/1‑93 (MQ=37)

     aaGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGa                                                                                         <  1:379289/93‑1 (MQ=38)

     aaGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGa                                                                                         >  2:3178253/1‑93 (MQ=38)

          aaGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcacc                                                                                    <  2:4512088/93‑1 (MQ=255)

          aaGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcacc                                                                                    >  2:2419949/1‑93 (MQ=255)

           aGTTGATGACTCATGATGACCCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcacca                                                                                   <  2:2737166/93‑1 (MQ=255)

            gTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcaccac                                                                                  <  2:1700371/93‑1 (MQ=255)

               gatgaCTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAAt                                                                               <  2:3116463/93‑1 (MQ=255)

               gatgaCTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAAt                                                                               <  2:3322257/93‑1 (MQ=255)

                atgaCTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAAtt                                                                              <  1:1634950/93‑1 (MQ=255)

                  gaCTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTc                                                                            <  1:1937774/93‑1 (MQ=255)

                  gaCTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTc                                                                            >  2:4683280/1‑93 (MQ=255)

                  gaCTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTc                                                                            >  1:3826429/1‑93 (MQ=255)

                   aCTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACGTGTTCGCACCTTCCCTAGCACACCACAATTTCg                                                                           >  1:196737/1‑93 (MQ=255)

                    cTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGc                                                                          >  1:1012203/1‑93 (MQ=255)

                     tCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGct                                                                         <  2:3951747/93‑1 (MQ=255)

                       atgatgAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctct                                                                       >  1:4167098/1‑93 (MQ=255)

                       atgatgAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTGCCCTAGAACACCACAATTTCGctct                                                                       <  1:2052331/93‑1 (MQ=255)

                        tgatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctctc                                                                      >  1:2617197/1‑93 (MQ=255)

                        tgatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctctc                                                                      <  1:736881/93‑1 (MQ=255)

                        tgatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctctc                                                                      <  1:528787/93‑1 (MQ=255)

                        tgatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctctc                                                                      <  1:3934139/93‑1 (MQ=255)

                        tgatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctctc                                                                      >  1:3105325/1‑93 (MQ=255)

                        tgatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTCCCCTAGAACACCACAATTTCGctctc                                                                      >  1:4289747/1‑93 (MQ=255)

                         tatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGTACTTTTTCGCACCTTCCCTAGAACACCACAATTTCGctctct                                                                     <  1:2494114/92‑1 (MQ=255)

                          atgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCtctctc                                                                    <  2:2868533/93‑1 (MQ=255)

                          atgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCtctctc                                                                    <  1:1312529/93‑1 (MQ=255)

                           tgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg                                                                   <  2:3656969/93‑1 (MQ=255)

                           tgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg                                                                   >  2:876980/1‑93 (MQ=255)

                           tgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg                                                                   >  1:1526996/1‑93 (MQ=255)

                            gaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCgg                                                                  <  1:994587/93‑1 (MQ=255)

                               cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTaa                                                               >  2:3861549/1‑93 (MQ=255)

                               cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTaa                                                               <  1:436946/93‑1 (MQ=255)

                               cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTaa                                                               <  1:4527849/93‑1 (MQ=255)

                                 cTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAgg                                                             >  1:2102523/1‑93 (MQ=255)

                                  tGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGc                                                            >  2:596794/1‑93 (MQ=255)

                                    ttCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCAc                                                          >  2:4323628/1‑93 (MQ=255)

                                    ttCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCAc                                                          <  2:2794743/93‑1 (MQ=255)

                                    ttCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCAc                                                          <  1:2228326/93‑1 (MQ=255)

                                      ccATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTg                                                        <  2:171232/93‑1 (MQ=255)

                                       cATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGt                                                       >  2:2441681/1‑93 (MQ=255)

                                       cATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGt                                                       >  2:1135583/1‑93 (MQ=255)

                                       cATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGt                                                       <  2:3633980/93‑1 (MQ=255)

                                        aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTc                                                      >  1:633316/1‑93 (MQ=255)

                                         tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTca                                                     >  2:786409/1‑93 (MQ=255)

                                         tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTca                                                     >  1:1594647/1‑93 (MQ=255)

                                           gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTcaca                                                   >  1:406150/1‑93 (MQ=255)

                                           gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTcaca                                                   >  2:762003/1‑93 (MQ=255)

                                            cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg                                                  <  1:280902/93‑1 (MQ=255)

                                               cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCAt                                               >  2:3424299/1‑93 (MQ=255)

                                                aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCAtt                                              >  2:3465186/1‑93 (MQ=255)

                                                 gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTc                                             <  2:2034214/93‑1 (MQ=255)

                                                 gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACCTAGAACACTACAATTTCGCTCTCTCGGTAACGCACTGTCACAGCATTc                                             >  2:2568748/1‑93 (MQ=255)

                                                   tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCaa                                           >  1:2828142/1‑93 (MQ=255)

                                                   tGACAAACATGATCTCATATAAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCaa                                           >  1:3629780/1‑93 (MQ=255)

                                                    gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAAc                                          <  1:1350474/93‑1 (MQ=255)

                                                     aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACa                                         <  2:3104294/93‑1 (MQ=255)

                                                       aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa                                       >  1:1860213/1‑93 (MQ=255)

                                                       aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa                                       >  1:2838053/1‑93 (MQ=255)

                                                       aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa                                       >  2:2725084/1‑93 (MQ=255)

                                                       aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa                                       >  1:990554/1‑93 (MQ=255)

                                                       aaaCATGATCTCATATCAGGGACTTGTGCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa                                       <  1:2434054/93‑1 (MQ=255)

                                                        aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGaa                                      >  1:3462051/1‑93 (MQ=255)

                                                         aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAt                                     >  1:2760295/1‑93 (MQ=255)

                                                         aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAt                                     >  2:2339299/1‑93 (MQ=255)

                                                            tGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAtgtg                                  >  2:4110723/1‑93 (MQ=255)

                                                            tGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAtgtg                                  >  2:160982/1‑93 (MQ=255)

                                                             gATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGa                                 <  1:3273619/93‑1 (MQ=255)

                                                             gATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGa                                 >  2:704059/1‑93 (MQ=255)

                                                               tctcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACt                               <  1:1828716/93‑1 (MQ=255)

                                                                ctcATATCAGCGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACtt                              <  1:4235252/93‑1 (MQ=255)

                                                                 tcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTg                             >  1:4595834/1‑93 (MQ=255)

                                                                  cATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGc                            <  1:2246543/93‑1 (MQ=255)

                                                                    tatCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCa                          <  1:1999842/93‑1 (MQ=255)

                                                                      tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGa                        >  1:289874/1‑93 (MQ=255)

                                                                        aGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGAtt                      >  2:1225452/1‑93 (MQ=255)

                                                                           gACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATttat                   <  2:1438538/93‑1 (MQ=255)

                                                                             cTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATttatta                 >  1:1208697/1‑93 (MQ=255)

                                                                             cTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATttatta                 >  2:2279254/1‑93 (MQ=255)

                                                                             cTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATttatta                 >  2:1316106/1‑93 (MQ=255)

                                                                              ttGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAg                <  1:534097/93‑1 (MQ=255)

                                                                              ttGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAg                >  2:2173047/1‑93 (MQ=255)

                                                                              ttGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAg                >  2:1981291/1‑93 (MQ=255)

                                                                                   cGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGcca           >  1:288484/1‑93 (MQ=255)

                                                                                     cACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGccacc         <  1:2419949/93‑1 (MQ=255)

                                                                                      aCCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGccacca        >  1:4635561/1‑93 (MQ=255)

                                                                                      aCCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGccacca        >  1:3080929/1‑93 (MQ=255)

                                                                                      aCCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGccacca        <  2:1858783/93‑1 (MQ=255)

                                                                                        cTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGa      <  1:3970128/93‑1 (MQ=255)

                                                                                        cTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGa      <  2:2200332/93‑1 (MQ=255)

                                                                                         ttCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGAt     >  1:188363/1‑93 (MQ=255)

                                                                                           cccTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGATGt   <  1:1421486/93‑1 (MQ=255)

                                                                                           cccTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGATGt   >  1:3526705/1‑93 (MQ=255)

                                                                                            ccTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGATGtt  <  1:4456648/93‑1 (MQ=255)

CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTGCCAGATTTATTAGCGCCACCAGATGTT  >  NC_000913/2065283‑2065467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.