| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 483,561 | (C)6→9 | coding (67/3150 nt) | acrB ← | acridine efflux pump |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 483555 | 19 (0.080) | 169 (0.680) +CCC |
103/166 | 1.0 | 89.9% | coding (73/3150 nt) | acrB | acridine efflux pump |
| ? | NC_000913 | 483556 = | 19 (0.070) | coding (72/3150 nt) | acrB | acridine efflux pump | |||||
Only 100 of 215 total aligned reads displayed.
CGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAG‑CCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCTGTTTAA > NC_000913/483466‑483648 | catcagcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccc > 2:4304447‑M2/92‑93 (MQ=255) tcagcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccccc > 1:734993‑M2/90‑93 (MQ=255) tcagcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccccc < 1:1323412‑M2/4‑1 (MQ=255) tcagcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccccc > 1:4746881‑M2/90‑93 (MQ=255) tcagcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccccc > 2:4976836‑M2/90‑93 (MQ=255) cagcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccccccc > 1:868360‑M2/89‑93 (MQ=255) agcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccccccc > 2:1313550‑M2/88‑93 (MQ=255) agcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccccccc < 2:3089455‑M2/6‑1 (MQ=255) agcgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccccccccc < 2:1859411‑M2/6‑1 (MQ=255) gcgccggggtaggaggcggagatcgttactgccggcggggcaatcgtaggatattgcgccaccggcaggttgaggatcgccagcccccccccc > 1:5780771‑M2/87‑92 (MQ=255) gcgccggggtaggaggcggagatcgttactgccggcggggcaatcgtaggatattgcgccacccgcaggttgaggatgtccagcccccccccc > 1:4689847‑M2/87‑92 (MQ=255) cgccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑Tg < 1:5902473‑M2/8‑1 (MQ=255) gccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGc < 1:1683032‑M2/9‑1 (MQ=255) ccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGcc > 2:1410142‑M2/84‑93 (MQ=255) ccggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGcc > 1:2840758‑M2/84‑93 (MQ=255) cggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCa < 2:4826718‑M2/11‑1 (MQ=255) ggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCaa > 1:209610‑M2/82‑93 (MQ=255) ggggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCaa > 2:3488625‑M2/82‑93 (MQ=255) gggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAAc > 1:994754‑M2/81‑93 (MQ=255) gggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAAc < 2:562965‑M2/13‑1 (MQ=255) gggtaggaggcggagatcgttactgccggcagtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAAc < 1:1828794‑M2/13‑1 (MQ=255) ggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACa < 2:4464575‑M2/14‑1 (MQ=255) ggtaggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACa < 1:1757848‑M2/14‑1 (MQ=255) taggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACatg < 1:6567891‑M2/16‑1 (MQ=255) aggaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCCACatga > 1:3401378‑M2/77‑93 (MQ=255) ggagtcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACatgat < 2:6035504‑M2/18‑1 (MQ=255) gaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCCACatgatg > 2:4619167‑M2/75‑93 (MQ=255) gaggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagccCCCCCC‑TGCCAACAtgatga > 1:1051823‑M2/74‑93 (MQ=255) aggcggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACAtgatga < 2:4175247‑M2/20‑1 (MQ=255) aggCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATa < 1:1270318/93‑1 (MQ=255) cggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATaa < 1:4386625‑M2/23‑1 (MQ=255) ggggatctttactgccggcggtgcaatcgtaggatatggcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAAt < 1:3753775‑M2/24‑1 (MQ=255) ggagatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAAt < 2:3180356‑M2/24‑1 (MQ=255) agatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATgg < 1:769936‑M2/26‑1 (MQ=255) gatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagctcCCCCCC‑TGCAAAAATGATGATAAtggg > 2:4495521‑M2/67‑92 (MQ=255) gatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGc < 1:5002125‑M2/27‑1 (MQ=255) gatcgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGc > 1:837364‑M2/67‑93 (MQ=255) cgttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCAAACATGATGATAATGGCGAt < 1:5845940‑M2/30‑1 (MQ=255) gttactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATc < 1:3061065‑M2/31‑1 (MQ=255) tactgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCAc > 2:509341‑M2/61‑93 (MQ=255) tgccggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑CGCCAACATGATGATAATGGCGGTcccccc > 2:1957458‑M2/58‑92 (MQ=255) gCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGc > 2:3256066/1‑93 (MQ=255) cggcggtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGc > 1:1265419‑M2/55‑93 (MQ=255) gcggTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCaaaa > 1:6257420/1‑93 (MQ=255) gtgcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCaaaaa < 1:5723248‑M2/44‑1 (MQ=255) ggTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCAACGCAAAAAt > 2:1325505/1‑93 (MQ=255) ggaatcgtaggaaattgccccaccggcagtttgaggatccccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATc < 2:523917‑M2/46‑1 (MQ=255) gcaatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATc < 1:4265738‑M2/46‑1 (MQ=255) aatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TTCCCACATGAAGATAATGGCGATCCACCacccaaaaaaccg > 1:2722981‑M2/46‑89 (MQ=255) aatcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCgg < 1:1228818‑M2/48‑1 (MQ=255) attcgtagtatatggcgcccccggcagtttgaggatcgccacccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCggg < 1:357828‑M2/49‑1 (MQ=255) atcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCggg > 1:5287791‑M2/45‑93 (MQ=255) atcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCggg < 2:1787358‑M2/49‑1 (MQ=255) acgtaggatattgcgcccccggcagtttgaggatcgccaaccccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCggg < 1:6375750‑M2/49‑1 (MQ=255) tcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGc > 1:3654336‑M2/44‑93 (MQ=255) tcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGc > 1:1468116‑M2/44‑93 (MQ=255) tcgtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGc < 1:4344169‑M2/50‑1 (MQ=255) gtaggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcga < 2:1905298‑M2/52‑1 (MQ=255) taggatattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgat > 2:2662130‑M2/41‑93 (MQ=255) aggatattgcgcccccggcagtttgaggaccgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgatc < 2:5037193‑M2/54‑1 (MQ=255) atattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGcgatcgat < 1:2632365‑M2/57‑1 (MQ=255) tattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATa > 1:2606243‑M2/36‑93 (MQ=255) tattgcgccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATa < 2:6191186‑M2/58‑1 (MQ=255) gATATTGCGCCACCGGCAGTTTGATGATCGCCAG‑CCCCCCTTGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATa < 2:1691507/93‑1 (MQ=255) atatTGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATaa < 2:6371656/93‑1 (MQ=255) atTGCGCCACCGGCAGTTTGAGCATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAg < 1:5592378/93‑1 (MQ=255) tgcgccaccggcagtttgaggatcgccagccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGa < 2:3672910‑M2/62‑1 (MQ=255) tGCGCCACCGGCAGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGaa > 2:6260540/1‑93 (MQ=255) ccaccggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAAt < 1:2177182‑M2/65‑1 (MQ=255) ccaccggcagttggaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAAt < 1:4602966‑M2/65‑1 (MQ=255) ccgggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTa < 1:3424854‑M2/67‑1 (MQ=255) cccgccagtttgagaatcgccaccccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTa < 2:2775693‑M2/67‑1 (MQ=255) cACCGGCAGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAg > 1:5256903/1‑93 (MQ=255) cggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAgg < 2:110265‑M2/69‑1 (MQ=255) ggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGc < 2:5388474‑M2/70‑1 (MQ=255) ggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGc < 2:2002307‑M2/70‑1 (MQ=255) ggcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGc > 2:196191‑M2/24‑93 (MQ=255) gcagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCa > 2:2080582‑M2/23‑93 (MQ=255) cagtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCAt < 2:3882638‑M2/72‑1 (MQ=255) agtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATg > 2:6501946‑M2/21‑93 (MQ=255) agtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATg < 1:6111145‑M2/73‑1 (MQ=255) gtttgaggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGt < 2:5732980‑M2/74‑1 (MQ=255) aGTTTGAGGATCGCCAGCCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTc > 1:3621055/1‑93 (MQ=255) aggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTaa < 2:3606946‑M2/79‑1 (MQ=255) aggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTaa < 1:1973228‑M2/79‑1 (MQ=255) ggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAAc < 1:4024488‑M2/80‑1 (MQ=255) ggatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACACAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAAc > 2:890436‑M2/14‑93 (MQ=255) gatcgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACg < 2:2935165‑M2/81‑1 (MQ=255) atcgccagcccCCCCCC‑CGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACgg > 2:3568550‑M2/12‑93 (MQ=255) cccccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGc < 1:2460633‑M2/83‑1 (MQ=255) cgccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCt < 1:6233972‑M2/84‑1 (MQ=255) gccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTc > 1:2542022‑M2/9‑93 (MQ=255) ccagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTcc < 1:6250780‑M2/86‑1 (MQ=255) cagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCt < 2:4770255‑M2/87‑1 (MQ=255) cagcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCt < 2:2436527‑M2/87‑1 (MQ=255) agcccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCTg > 2:3152239‑M2/6‑93 (MQ=255) ccCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCTtttt > 1:2895868‑M2/3‑93 (MQ=255) cCCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCTGTTTa > 1:3756988‑M2/2‑93 (MQ=255) cccccc‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCTGTttaa > 2:4758599/1‑93 (MQ=255) cccccc‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCTGTttaa > 2:2804163/1‑93 (MQ=255) | CGCATCAGCGCCGGGGTAGGAGGCGGAGATCGTTACTGCCGGCGGTGCAATCGTAGGATATTGCGCCACCGGCAGTTTGAGGATCGCCAG‑CCCCCC‑TGCCAACATGATGATAATGGCGATCACCCACGCAAAAATCGGGCGATCGATAAAGAAATTAGGCATGTCTTAACGGCTCCTGTTTAA > NC_000913/483466‑483648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |