| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4008398 | 75 (0.310) | 54 (0.230) +AAGA |
26/172 | 17.5 | 42.7% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 75 (0.300) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AA‑AGGCCATGCGCTGGAAG‑GC‑TGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008309‑4008398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG > NC_000913/4008399‑4008421 |||| GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGA < 2:1404079/93‑1 CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAA < 2:5007933/93‑1 CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAA < 1:2722700/93‑1 CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAA < 1:477398/93‑1 GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAG > 1:1750405/1‑93 ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAA‑AGGTCATGCGCTTGAAG‑GCGTGGCGCAGA > 1:2318867/1‑93 TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAA > 2:3486276/1‑93 CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAA > 1:1260781/1‑93 GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAAC < 1:1640675/93‑1 GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAAC < 1:4007722/93‑1 CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT < 2:6026933/93‑1 CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT < 1:3310994/93‑1 CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT > 2:421717/1‑93 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑G < 1:267579/93‑1 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑G < 2:5525730/93‑1 GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑G > 1:5909326/1‑93 TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GG < 2:2296453/93‑1 TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GG > 2:3852043/1‑93 TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GG < 1:619054/93‑1 TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAA‑AAGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GG > 1:5582033/1‑93 CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGg < 2:4786346/93‑2 CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGg > 1:3417546/1‑92 CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGCTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGg > 2:5410473/1‑92 AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGgc > 2:4143889/1‑91 AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGgc > 1:2663374/1‑91 AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGgc < 1:4591932/93‑3 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGggt > 2:4757319/1‑90 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGgct > 2:4245074/1‑90 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGgct < 2:4231659/93‑4 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACT‑GGgct < 2:5773196/93‑4 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCCCTGGAAGCGG‑GGGCGAAGAAACT‑GGgct > 2:3275578/1‑90 ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAAA‑AGGCCATGCGCTGGAAGCGG‑GGGCGAAGAAACT‑GGgct > 1:3007050/1‑90 TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACA > 1:5703531/1‑93 TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACA < 2:5538790/93‑1 TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACA < 1:4657413/93‑1 TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACA > 2:5975513/1‑93 CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTTGAAGCGG‑TGGCGAAGAAACTGGGCTACAG > 2:3151136/1‑93 AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCTAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑C < 2:4169769/93‑1 AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑C < 2:7446/93‑1 AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑C < 2:2634228/93‑1 AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑C > 1:1382279/1‑93 AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑C > 1:795188/1‑93 GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cc > 2:4088281/1‑92 GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cc < 2:6341580/93‑2 TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cct < 2:4771019/93‑3 TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cctg > 2:4529993/1‑90 TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cctg < 2:3164219/93‑4 TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cctg < 1:4213692/93‑4 TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cctg < 1:39148/93‑4 TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAG‑Cctga > 2:2700719/1‑89 TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAG > 1:2515912/1‑93 CTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAGAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGG > 2:4529696/1‑93 CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATT > 2:4388804/1‑93 CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATT < 1:5362317/93‑1 CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATT > 2:3937377/1‑93 CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTG < 2:4318859/93‑1 CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTG > 1:5199948/1‑93 CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAA‑AGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTG > 2:636747/1‑93 |||| GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AA‑AGGCCATGCGCTGGAAG‑GC‑TGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4008309‑4008398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG > NC_000913/4008399‑4008421 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |