| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4008398 | 75 (0.310) | 54 (0.230) +AAGA |
26/172 | 17.5 | 42.7% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 75 (0.300) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑A‑‑‑‑ACT‑GG‑CTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑GCTGCATTATG > NC_000913/4008309‑4008483 | gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a < 2:1404079/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a‑‑‑‑a < 1:477398/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a‑‑‑‑a < 1:2722700/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a‑‑‑‑a < 2:5007933/93‑1 (MQ=255) gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a‑‑‑‑ag > 1:1750405/1‑92 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a‑‑‑‑agaa > 2:3486276/1‑90 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a‑‑‑‑agaaa > 1:1260781/1‑89 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtt > 1:1148257/1‑93 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtt < 1:5720128/93‑1 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtt < 2:3052296/93‑1 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtt < 1:2423527/93‑1 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttg < 1:5203346/93‑3 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttg > 1:5279004/1‑91 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttg < 2:2720365/93‑3 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttg < 2:2612051/93‑3 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttg < 1:6351818/93‑3 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttg < 2:4945205/93‑3 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttgg > 2:2368692/1‑90 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttgg < 1:1390840/93‑4 (MQ=255) gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AAGAGACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttggg > 2:3799169/1‑89 (MQ=255) gAAGTGATGGCGGGCGGCGTCTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGtttggt < 2:2138944/93‑5 (MQ=255) aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 2:3643840/93‑1 (MQ=255) aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 1:4539782/93‑1 (MQ=255) aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg > 1:4895227/1‑93 (MQ=255) tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:2652227/93‑1 (MQ=255) ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:1677885/93‑1 (MQ=255) ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:1612030/93‑1 (MQ=255) ggcgcgcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACT‑GGCCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:819012/93‑1 (MQ=255) gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg < 2:4096718/93‑1 (MQ=255) cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa < 1:3726700/93‑1 (MQ=255) gggcggCGTTTCAAAAGGGCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:3318022/93‑1 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa > 2:201803/1‑93 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 1:3501601/93‑1 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:4668012/93‑1 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 2:2472633/93‑1 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac > 2:2412012/1‑93 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac > 2:1145412/1‑93 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac > 2:4169501/1‑93 (MQ=255) gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg < 2:733206/93‑1 (MQ=255) gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg < 1:3946254/93‑1 (MQ=255) cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:5029312/93‑1 (MQ=255) cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:3733356/93‑1 (MQ=255) cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:3061014/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:6349720/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 1:838731/1‑93 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:6002290/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:506903/1‑93 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:1387788/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:2279083/93‑1 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg < 1:1704662/93‑1 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:550341/1‑93 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:1938896/1‑93 (MQ=255) cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:2284238/93‑1 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:1050943/1‑93 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc < 2:3718784/93‑1 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:5795906/1‑93 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:3054417/1‑93 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:2486652/91‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:2970238/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:269946/2‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 2:1611781/1‑93 (MQ=255) aaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc > 1:5171996/1‑93 (MQ=255) aaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc > 1:501772/1‑93 (MQ=255) aaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc > 1:1121834/1‑93 (MQ=255) aaGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 2:4329317/93‑1 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 2:871705/93‑1 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 2:6392472/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:3051662/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:4138537/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:4308666/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:4406304/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:5530256/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:616170/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 2:2466575/1‑93 (MQ=255) ggCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg > 1:317445/1‑93 (MQ=255) ggCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:3417397/93‑1 (MQ=255) ggCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 2:3128863/93‑1 (MQ=255) ggCCATGCGCTGGAAGCGGTGGCGAAGAA‑‑‑‑ACTGGG‑CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 2:1872397/93‑1 (MQ=255) aa‑‑‑‑aCT‑GGTCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACTGGATGACCGACGTCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATg < 2:5137555/92‑1 (MQ=255) | GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑A‑‑‑‑ACT‑GG‑CTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑GCTGCATTATG > NC_000913/4008309‑4008483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |