BRESEQ :: Marginal Predictions

breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	AP012306	3,901,338	0	T	G	21.7%	270.0 / 16.2	120	T54P (ACC→CCC)	pyrB	aspartate carbamoyltransferase, catalytic subunit

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP012306	1102787 =	317 (1.250)	6 (0.020)	6/522	20.1	1.9%	coding (763/2676 nt)	adhE	fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase
*	?	AP012306	= 1102783	307 (1.260)	6 (0.020)	6/522	20.1	1.9%	coding (767/2676 nt)	adhE	fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase
*	?	AP012306	1196691 =	236 (0.930)	6 (0.020)	6/526	20.2	2.6%	coding (1012/3846 nt)	hrpA	ATP‑dependent helicase
*	?	AP012306	1196726 =	230 (0.940)	6 (0.020)	6/526	20.2	2.6%	coding (1047/3846 nt)	hrpA	ATP‑dependent helicase
*	?	AP012306	1048005 =	236 (0.930)	3 (0.010)	3/508	22.3	1.3%	coding (504/915 nt)	ldcA	L,D‑carboxypeptidase A
*	?	AP012306	1048023 =	220 (0.930)	3 (0.010)	3/508	22.3	1.3%	coding (486/915 nt)	ldcA	L,D‑carboxypeptidase A
*	?	AP012306	2905748 =	230 (0.910)	3 (0.010)	3/520	22.6	1.4%	intergenic (+2/‑128)	trkA/mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel
*	?	AP012306	2905776 =	210 (0.870)	3 (0.010)	3/520	22.6	1.4%	intergenic (+30/‑100)	trkA/mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel
*	?	AP012306	3174120 =	371 (1.460)	3 (0.010)	3/524	22.7	0.82%	coding (522/825 nt)	bax	conserved protein
*	?	AP012306	= 3174116	366 (1.500)	3 (0.010)	3/524	22.7	0.82%	coding (526/825 nt)	bax	conserved protein