| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BA000036 | 1 = | 0 (0.000) | 117 (0.560) | 94/496 | 5.2 | 100% | coding (1/1575 nt) | Cgl0001 | ATPase involved in DNA replication initiation |
| ? | BA000036 | = 3309401 | 0 (0.000) | intergenic (‑653/–) | Cgl3099/– | Ribosomal protein L34/– | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATG > BA000036/1‑249 | acatagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgc > 2:22/6‑249 (MQ=255)acatagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgc > 2:75/6‑249 (MQ=255) atagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgcgc < 1:1392873/246‑1 (MQ=255) tagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCATACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCa > 2:62/3‑249 (MQ=255) tagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCa > 1:173/3‑249 (MQ=255) tagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCa > 2:18/3‑249 (MQ=255) agTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCAt > 2:1/2‑249 (MQ=255) gTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATg < 1:1392925/249‑1 (MQ=255) | ‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATG > BA000036/1‑249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |