New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | BA000036 | 1 = | 0 (0.000) | 117 (0.560) | 94/496 | 5.2 | 100% | coding (1/1575 nt) | Cgl0001 | ATPase involved in DNA replication initiation |
? | BA000036 | = 3309401 | 0 (0.000) | intergenic (‑653/–) | Cgl3099/– | Ribosomal protein L34/– | |||||
Rejected: Coverage evenness skew score above cutoff. |
TTCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATA‑‑‑‑‑‑‑‑‑‑‑‑ > BA000036/3309153‑3309401 | ttCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATa < 1:1392893/249‑1 (MQ=255) tCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCC‑CAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagt < 1:1392894/249‑3 (MQ=255) cacaGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtg < 1:1392897/249‑4 (MQ=255) cacaGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtg < 2:1392895/249‑4 (MQ=255) cacaGGTACTGCGCTACCCGCTGGATGAACGTTTCTGGGAAGAGTTATCCACAGCTTTTGACAACATTGTGGTAACAATGGTTATAGGCGTTTTTCGATGTGAATGGAGATGTACAATCGTCGAGATAGCCCACGTTGATAACAAAGCGGAATTTTGCCCTGCTTATTAGCTCCTCCGCCATCCTTCATCCACGGCTGTATAAAATTAGTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATaatg < 2:1392896/249‑4 (MQ=255) caGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgag < 1:1392898/249‑6 (MQ=255) caGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgag < 1:1392899/249‑6 (MQ=255) ggTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagcc < 1:1392900/249‑8 (MQ=255) ggTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagcc > 1:1392901/1‑242 (MQ=255) gTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagcca < 2:1392902/249‑9 (MQ=255) aGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccaga < 2:1392903/249‑11 (MQ=255) gTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccagaa > 1:1392904/1‑238 (MQ=255) tGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccagaac < 2:1392905/249‑13 (MQ=255) tGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccagaac < 2:1392906/249‑13 (MQ=255) | TTCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATA‑‑‑‑‑‑‑‑‑‑‑‑ > BA000036/3309153‑3309401 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |