New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	1 =	0 (0.000)	89 (0.430)	75/496	7.5	100%	coding (1/1575 nt)	Cgl0001	ATPase involved in DNA replication initiation
	?	BA000036	= 3309401	0 (0.000)					intergenic (‑653/–)	Cgl3099/–	Ribosomal protein L34/–
Rejected: Coverage evenness skew score above cutoff.

‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATG  >  BA000036/1‑249      |                                                                                                                                                                                                                                                         acatagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgc       >  1:39/6‑249 (MQ=255)  catagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgcg      >  1:35/5‑249 (MQ=255)   atagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGACGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTgcgc     >  1:28/4‑249 (MQ=255)    tagTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCa    >  1:95/3‑249 (MQ=255)     agTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCAt   <  2:1313798/248‑1 (MQ=255)     agTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCAt   >  2:34/2‑249 (MQ=255)      gTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGAGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATg  <  2:1313839/249‑1 (MQ=255)      |                                                                                                                                                                                                                                                         ‑‑‑‑‑GTGAGCCAGAACTCATCTTCTTTGCTCGAAACCTGGCGCCAAGTTGTTGCCGATCTCACAACTTTGAGCCAGCAAGCGGACAGTGGATTCGACCCATTGACGCCAACTCAACGTGCATATTTGAACCTGACGAAGCCGATTGCCATCGTCGATGGCTACGCCGTGCTGTCCACACCCAACGCGATGGCAAAAAATGTCATTGAAAACGATTTGGGCGATGCTTTGACCCGTGTGTTGTCGCTGCGCATG  >  BA000036/1‑249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.