New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	1 =	0 (0.000)	89 (0.430)	75/496	7.5	100%	coding (1/1575 nt)	Cgl0001	ATPase involved in DNA replication initiation
	?	BA000036	= 3309401	0 (0.000)					intergenic (‑653/–)	Cgl3099/–	Ribosomal protein L34/–
Rejected: Coverage evenness skew score above cutoff.

TCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATA‑‑‑‑‑‑‑‑‑‑‑  >  BA000036/3309154‑3309401                                                                                                                                                                                                                                                        |            tCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATag            <  2:1313877/249‑2 (MQ=255)  ccACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagt           >  2:1313879/1‑247 (MQ=255)     caGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgag        >  2:1313880/1‑244 (MQ=255)       ggTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagcc      <  1:1313881/249‑8 (MQ=255)       ggTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagcc      >  1:1313954/1‑242 (MQ=255)        gTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagcca     <  1:1313882/249‑9 (MQ=255)         tAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccag    <  2:1313883/249‑10 (MQ=255)          aGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccaga   >  1:1313884/1‑239 (MQ=255)           gTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATagtgagccagaa  <  1:1313885/249‑12 (MQ=255)                                                                                                                                                                                                                                                        |            TCCACAGGTAGTGCGCTATCCTGTGGATAAACGTTTTTGGGAAAAGTTATCCACAGCTGTGGACAACATTGTGGAAACAATGGTTATGGGCGTTTTTCGATGTGAATGGAGCTGTAGAAACATCGAGAACGCCCACGTGGATAACAAAGCGGAATTTTGCCCTGCTTTTTAGCTTCTCCGCCACCCTTCATCCACGGCTGAATAAAATTATTTTTCGATAGTTTCGCCAAAAGGAGATACCTAACATA‑‑‑‑‑‑‑‑‑‑‑  >  BA000036/3309154‑3309401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.