New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	= 1776694	1 (0.000)	71 (0.400)	60/426	8.0	99.4%	intergenic (+10/+1405)	codon recognized:GTG/Cgl1675	tRNA‑Val/Hypothetical protein
	?	BA000036	1986950 =	0 (0.000)					intergenic (‑360/+554)	Cgl1881/Cgl1882	Integrase/Putative transposase
Rejected: Coverage evenness skew score above cutoff.

CCTCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCCCCTGCTTGCAGGGGTTTTATTCATTTTTAGGGTTAAAAAACACGCGTTTGTGGGGTGAACGTGGGGTGAAAGAATTCATTACGAGTGCTTTTAAGCACCTCTCCGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCA  >  BA000036/1776447‑1776835                                                                                                                                                                                                                                                        |                                                                                                                                              ccTCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGca                                                                                                                                              >  1:752965/1‑248 (MQ=255)   tCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATGTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTAGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGcacc                                                                                                                                            >  2:752924/1‑246 (MQ=255)   ncGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGcacc                                                                                                                                            <  1:752540/248‑1 (MQ=255)    cGAATATTTGACCAATGCTCATCGATCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCt                                                                                                                                           <  2:752541/249‑1 (MQ=255)      aaTATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCCATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGc                                                                                                                                         >  2:752909/1‑249 (MQ=255)        tatTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCtt                                                                                                                                       <  1:752543/249‑1 (MQ=255)        tatTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCtt                                                                                                                                       >  2:752962/1‑249 (MQ=255)        tatTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCtt                                                                                                                                       <  2:752542/249‑1 (MQ=255)        tatTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTATTTAGCACCTGCtt                                                                                                                                       >  2:753142/1‑249 (MQ=255)          tttGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGc                                                                                                                                     <  1:752544/249‑1 (MQ=255)             gACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAgg                                                                                                                                  <  2:752545/249‑1 (MQ=255)                cAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGt                                                                                                                               <  2:752546/249‑1 (MQ=255)                 aaTGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGtt                                                                                                                              <  2:752547/249‑1 (MQ=255)                  aTGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGttt                                                                                                                             >  2:752979/1‑249 (MQ=255)                  aTGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGttt                                                                                                                             <  2:752548/249‑1 (MQ=255)                   tGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGtttt                                                                                                                            <  1:752549/249‑1 (MQ=255)                     cTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTAt                                                                                                                          >  1:752929/1‑249 (MQ=255)                        aTCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCa                                                                                                                       <  2:752550/249‑1 (MQ=255)                        aTCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCa                                                                                                                       >  1:752940/1‑249 (MQ=255)                         tCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAt                                                                                                                      <  1:752551/249‑1 (MQ=255)                          cGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAtt                                                                                                                     <  1:752552/249‑1 (MQ=255)                           gCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGTGGTTTTATTCAttt                                                                                                                    >  1:752900/1‑249 (MQ=255)                           gCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAttt                                                                                                                    <  2:752554/249‑1 (MQ=255)                           gCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAttt                                                                                                                    >  2:752950/1‑249 (MQ=255)                           gCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAttt                                                                                                                    <  1:752553/249‑1 (MQ=255)                            cTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAttta                                                                                                                   <  2:752555/249‑2 (MQ=255)                             tCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAtttat                                                                                                                  >  2:752936/1‑247 (MQ=255)                              ccAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTtata                                                                                                                 <  1:752556/249‑1 (MQ=255)                               cAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAg                                                                                                                <  1:752557/249‑1 (MQ=255)                                aGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAgg                                                                                                               >  1:753000/1‑249 (MQ=255)                                 gATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAggg                                                                                                              <  2:752558/249‑1 (MQ=255)                                  aTTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGt                                                                                                             <  1:752559/249‑1 (MQ=255)                                   ttCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGtc                                                                                                            >  2:752937/1‑248 (MQ=255)                                     cAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaa                                                                                                          >  2:752946/1‑249 (MQ=255)                                       gAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaaa                                                                                                        <  1:752560/249‑1 (MQ=255)                                       gAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaaa                                                                                                        <  2:752561/249‑1 (MQ=255)                                        aaaCGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaaaa                                                                                                       <  1:752562/249‑1 (MQ=255)                                         aaCGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaaaaa                                                                                                      <  2:752563/249‑1 (MQ=255)                                           cGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAaca                                                                                                    >  1:752972/1‑249 (MQ=255)                                            gtggtgACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAacat                                                                                                   >  1:752948/1‑248 (MQ=255)                                              ggtgACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACAtgc                                                                                                 <  2:752564/249‑1 (MQ=255)                                               gtgACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACAtgcg                                                                                                >  2:752925/1‑249 (MQ=255)                                               gtgACATCCGATTTACATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACGACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACAtgcg                                                                                                <  2:752565/249‑1 (MQ=255)                                                tgACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGt                                                                                               <  1:752567/249‑1 (MQ=255)                                                tgACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGt                                                                                               <  2:752568/249‑1 (MQ=255)                                                tgACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGt                                                                                               <  2:752566/249‑1 (MQ=255)                                                 gACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGtt                                                                                              <  2:752569/249‑1 (MQ=255)                                                    aTCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTtgt                                                                                           >  2:752912/1‑249 (MQ=255)                                                    aTCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTtgt                                                                                           >  1:752932/1‑249 (MQ=255)                                                             ccATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGaan                                                                                  >  1:752923/1‑248 (MQ=255)                                                                                                                      cGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCAc              >  2:752983/1‑249 (MQ=14)                                                                                                                        aTTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGa            >  2:752947/1‑249 (MQ=11)                                                                                                                        aTTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGa            >  1:753107/1‑249 (MQ=14)                                                                                                                         ttATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGAt           <  1:752574/249‑1 (MQ=11)                                                                                                                         ttATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGAt           >  2:752986/1‑249 (MQ=14)                                                                                                                          tATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATc          <  1:752575/249‑1 (MQ=11)                                                                                                                           aTGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATcc         <  1:752576/249‑1 (MQ=14)                                                                                                                              aaTATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCcgcg      <  2:752577/249‑1 (MQ=11)                                                                                                                                  ttCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCa  <  1:752578/249‑1 (MQ=11)                                                                                                                                          ntCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCCCCTGCTTGCAGGGGTTTTATTCATTTTTAGGGTTAAAAAACACGCGTTTGTGGGGTGAACGTGGGGTGAAAGAATTCATTACGAGTGCTTTTAAGCACCTCTCCGTCACTCCCGCTAGTTTTATTCACGATCCGCGt     <  2:752580/248‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                              CCTCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCCCCTGCTTGCAGGGGTTTTATTCATTTTTAGGGTTAAAAAACACGCGTTTGTGGGGTGAACGTGGGGTGAAAGAATTCATTACGAGTGCTTTTAAGCACCTCTCCGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCA  >  BA000036/1776447‑1776835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.