New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	= 1776694	1 (0.000)	71 (0.400)	60/426	8.0	99.4%	intergenic (+10/+1405)	codon recognized:GTG/Cgl1675	tRNA‑Val/Hypothetical protein
	?	BA000036	1986950 =	0 (0.000)					intergenic (‑360/+554)	Cgl1881/Cgl1882	Integrase/Putative transposase
Rejected: Coverage evenness skew score above cutoff.

CAGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTCCC  >  BA000036/1986913‑1987196                                      |                                                                                                                                                                                                                                                       tcgCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGTGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCt                                     <  2:752900/247‑1 (MQ=255) tcgCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCt                                     <  2:752899/247‑1 (MQ=255)     tGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTc                                 >  2:752951/1‑249 (MQ=255)      ggTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCt                                >  1:752968/1‑249 (MQ=255)       gTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTg                               <  1:752901/249‑1 (MQ=255)       gTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTg                               >  1:752989/1‑249 (MQ=255)        ttCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGTGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGt                              <  2:752902/249‑1 (MQ=255)         tCGAACCCAGCTAGGACCACTTGTTTAACACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGATGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATTGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTc                             <  1:752903/249‑1 (MQ=255)               ccAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCat                       >  1:752991/1‑249 (MQ=255)                cAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCata                      <  2:752904/249‑1 (MQ=255)                 aGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataa                     >  2:752969/1‑249 (MQ=255)                 aGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataa                     <  1:752905/249‑1 (MQ=255)                  gCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataat                    <  2:752907/249‑1 (MQ=255)                  gCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataat                    >  1:752952/1‑249 (MQ=255)                  gCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataat                    <  1:752906/249‑1 (MQ=255)                  gCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataat                    >  1:752997/1‑249 (MQ=255)                    naGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAatat                  <  1:752908/248‑1 (MQ=255)                     aGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATTCGTTTGTGGGGTGAAAGGTTTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGACACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGAAAGATGCCCCTCCTGGCCCTCTTCTGTCATTCTTAATATg                 >  1:753008/1‑249 (MQ=255)                     aGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATg                 <  1:752909/249‑1 (MQ=255)                      ggACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGc                <  2:752910/249‑1 (MQ=255)                       gACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGTGGCACCTTTGATACGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGcn               >  2:752981/1‑248 (MQ=255)                        aCCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGcnn              >  1:753021/1‑247 (MQ=255)                         ccACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCaga             <  2:752911/249‑1 (MQ=255)                          cACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCagag            >  1:752954/1‑249 (MQ=255)                              tGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGttt        <  2:752913/249‑1 (MQ=255)                              tGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGttt        <  2:752914/249‑1 (MQ=255)                              tGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGttt        <  1:752912/249‑1 (MQ=255)                               gTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGtttt       <  1:752915/249‑1 (MQ=255)                                  tAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTACGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTc    <  1:752916/249‑1 (MQ=255)                                  tAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTc    <  1:752917/249‑1 (MQ=255)                                  tAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTc    <  2:752918/249‑1 (MQ=255)                                    gCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTccc  >  2:753067/1‑249 (MQ=255)                                      |                                                                                                                                                                                                                                                       CAGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTCCC  >  BA000036/1986913‑1987196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.