New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	= 1776694	0 (0.000)	74 (0.430)	64/426	6.3	100%	intergenic (+10/+1405)	codon recognized:GTG/Cgl1675	tRNA‑Val/Hypothetical protein
	?	BA000036	1986950 =	0 (0.000)					intergenic (‑360/+554)	Cgl1881/Cgl1882	Integrase/Putative transposase
Rejected: Coverage evenness skew score above cutoff.

CCTCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCCCCTGCTTGCAGGGGTTTTATTCATTTTTAGGGTTAAAAAACACGCGTTTGTGGGGTGAACGTGGGGTGAAAGAATTCATTACGAGTGCTTTTAAGCACCTCTCCGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCC  >  BA000036/1776447‑1776834                                                                                                                                                                                                                                                        |                                                                                                                                             ccTCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGca                                                                                                                                             <  2:721337/249‑2 (MQ=255)  cTCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGcac                                                                                                                                            >  2:721748/1‑247 (MQ=255)    cGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCt                                                                                                                                          >  1:721754/1‑249 (MQ=255)    cGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCt                                                                                                                                          >  2:721738/1‑249 (MQ=255)     gAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTg                                                                                                                                         <  1:721339/249‑1 (MQ=255)     gAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTg                                                                                                                                         <  1:721338/249‑1 (MQ=255)         atTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTg                                                                                                                                     >  1:721716/1‑249 (MQ=255)         atTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTg                                                                                                                                     <  2:721341/249‑1 (MQ=255)         atTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTg                                                                                                                                     <  2:721340/249‑1 (MQ=255)          tatGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGc                                                                                                                                    <  2:721342/247‑1 (MQ=255)           ttGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGcn                                                                                                                                   >  1:721803/1‑248 (MQ=255)            tGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAg                                                                                                                                  >  2:721784/1‑249 (MQ=255)             gACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAgg                                                                                                                                 >  2:721734/1‑249 (MQ=255)              aCCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAggg                                                                                                                                <  2:721343/249‑1 (MQ=255)               ccAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTAAAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACAGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTACTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCAAGCTAGGACCACTTGTTTAGCACCTGCTTGCAgggg                                                                                                                               >  2:721695/1‑249 (MQ=255)                 aaTGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGtt                                                                                                                             <  1:721344/249‑1 (MQ=255)                  aTGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCATCTGCTTGCAGGGGttt                                                                                                                            <  1:721345/249‑1 (MQ=255)                  aTGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGttt                                                                                                                            >  1:721757/1‑249 (MQ=255)                   tGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGtttt                                                                                                                           <  1:721346/249‑1 (MQ=255)                      tCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTAtt                                                                                                                        >  1:721723/1‑249 (MQ=255)                       cATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTc                                                                                                                       <  1:721347/249‑1 (MQ=255)                          cGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAtt                                                                                                                    <  2:721349/249‑1 (MQ=255)                          cGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAtt                                                                                                                    <  2:721348/249‑1 (MQ=255)                             nccAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCAtttat                                                                                                                 <  1:721350/248‑3 (MQ=255)                                aGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAgg                                                                                                              >  2:721730/1‑249 (MQ=255)                                aGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAgg                                                                                                              <  2:721352/249‑1 (MQ=255)                                aGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAgg                                                                                                              <  2:721351/249‑1 (MQ=255)                                 gATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAggg                                                                                                             >  1:721692/1‑249 (MQ=255)                                  aTTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGt                                                                                                            <  2:721353/249‑1 (MQ=255)                                   ttCAGAAACGTGGTGACATCCGATCTCCATCTATTAGGTACAAGAATTTCTCTTCCATATATAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGtc                                                                                                           <  2:721354/249‑2 (MQ=255)                                    tCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGtca                                                                                                          <  2:721355/249‑3 (MQ=255)                                     cAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGtcaa                                                                                                         >  2:721705/1‑246 (MQ=255)                                      aGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGTGTGAAAAACTGAACCGACTATGAATATTCAAAACCTCCGTGTTAACTTCTAAGCACAACGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACAACGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaa                                                                                                        <  2:721356/249‑1 (MQ=38)                                      aGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaa                                                                                                        >  2:721736/1‑249 (MQ=255)                                      aGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaa                                                                                                        >  1:721718/1‑249 (MQ=255)                                        aaaCGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaaaa                                                                                                      <  2:721357/249‑1 (MQ=255)                                         aaCGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCaaaaaa                                                                                                     <  2:721358/249‑1 (MQ=255)                                             tggtgACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAacatg                                                                                                 >  1:721737/1‑247 (MQ=255)                                                 gACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGtt                                                                                             <  2:721359/249‑1 (MQ=255)                                                 gACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGtt                                                                                             >  2:721772/1‑249 (MQ=255)                                                   cATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACGTGCGTTtg                                                                                           >  2:721712/1‑249 (MQ=255)                                                   cATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTtg                                                                                           >  2:721370/1‑249 (MQ=255)                                                        gATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTgggg                                                                                      >  2:721721/1‑249 (MQ=255)                                                         aTTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGt                                                                                     <  2:721360/249‑1 (MQ=255)                                                           ttCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGa                                                                                   >  1:721750/1‑249 (MQ=255)                                                            tCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGaa                                                                                  <  2:721361/249‑1 (MQ=255)                                                                tCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCCGCTAGGACCCCTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGaaagga                                                                              >  2:721727/1‑245 (MQ=255)                                                                tCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGaaagga                                                                              >  1:721751/1‑245 (MQ=255)                                                                 nnaTTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGaaaggat                                                                             <  2:721362/247‑6 (MQ=255)                                                                                                                    aCCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTc               <  1:721370/249‑1 (MQ=14)                                                                                                                         ttATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGAt          >  1:721732/1‑249 (MQ=11)                                                                                                                          tATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATc         >  1:721761/1‑249 (MQ=11)                                                                                                                           aTGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATcc        >  1:721785/1‑249 (MQ=11)                                                                                                                             gAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCcgc      >  2:721802/1‑249 (MQ=11)                                                                                                                                 atTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTT‑‑‑‑‑‑‑‑‑‑‑GTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTcc  <  1:721375/249‑1 (MQ=11)                                                                                                                                                                                                                                                        |                                                                                                                                             CCTCGAATATTTGACCAATGCTCATCGCTCCAGATTCAGAAACGTGGTGACATCCGATTTCCATCTATTAGGTACAAGAATTTCTCTTCCATATAGAAGCTGGGTGAAAAATTGAACCGATTATGAATATTCAAAACTTCCGTGTTAACTTCTAAGCACACCGCAAGGTCCTATGGCTCAGTGGAAGAGCGTTCCGTTCACACCGGAAAGGTCGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCCCCTGCTTGCAGGGGTTTTATTCATTTTTAGGGTTAAAAAACACGCGTTTGTGGGGTGAACGTGGGGTGAAAGAATTCATTACGAGTGCTTTTAAGCACCTCTCCGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCC  >  BA000036/1776447‑1776834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.