New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BA000036	= 1776694	0 (0.000)	74 (0.430)	64/426	6.3	100%	intergenic (+10/+1405)	codon recognized:GTG/Cgl1675	tRNA‑Val/Hypothetical protein
	?	BA000036	1986950 =	0 (0.000)					intergenic (‑360/+554)	Cgl1881/Cgl1882	Integrase/Putative transposase
Rejected: Coverage evenness skew score above cutoff.

AGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTC  >  BA000036/1986914‑1987194                                     |                                                                                                                                                                                                                                                     cgCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCtt                                  >  1:721786/2‑249 (MQ=255)    nggTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTc                               <  2:721691/248‑1 (MQ=255)     ggTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCt                              >  2:721769/1‑249 (MQ=255)       ttCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGt                            >  2:721747/1‑249 (MQ=255)         cGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCa                          <  2:721692/249‑1 (MQ=255)          gAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCAt                         >  2:721775/1‑249 (MQ=255)          gAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCAt                         <  2:721693/249‑1 (MQ=255)              ccAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCat                     >  1:721746/1‑249 (MQ=255)                aGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataa                   <  1:721694/249‑1 (MQ=255)                  cTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataata                 <  1:721695/249‑1 (MQ=255)                  cTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCataata                 <  1:721696/249‑1 (MQ=255)                    aGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATg               <  2:721697/249‑1 (MQ=255)                     ggACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGc              >  2:721783/1‑249 (MQ=255)                      gACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGcn             >  1:721791/1‑248 (MQ=255)                        ccACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCaga           <  1:721698/249‑1 (MQ=255)                         cACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCagag          <  1:721699/249‑1 (MQ=255)                           cTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGt        <  1:721700/249‑1 (MQ=255)                             tGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGttt      >  2:721762/1‑249 (MQ=255)                             tGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGttt      >  2:721799/1‑249 (MQ=255)                               tttAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGttttt    <  2:721701/249‑1 (MQ=255)                               tttAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGttttt    <  1:721702/249‑1 (MQ=255)                                ttAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGtttttt   >  1:721753/1‑249 (MQ=255)                                ttAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGtttttt   >  1:721728/1‑249 (MQ=255)                                ttAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGtttttt   <  1:721703/249‑1 (MQ=255)                                 tAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTc  >  2:721704/1‑249 (MQ=255)                                     |                                                                                                                                                                                                                                                     AGCTGGTTCGAACCCAGCTAGGACCACTTGTTTAGCACCTGCTTGCAGGGGTTTTATTCATTTATAGGGTCAAAAAACATGCGTTTGTGGGGTGAAAGGATTCATTACAGGTACTTTTAAGCACCTCCTGGTCACTCCCGCTAGTTTTATTCACGATCCGCGTCCAGCTGCGACAAACCGCACTATAGGGGCACCTTTGATGCGTCTCCGCTGTGCATAATTTTTTGCAAGATGCCCCTCCTGGCCCTTTTCTGTCATGCATAATATGCAGAGGTTTTTTC  >  BA000036/1986914‑1987194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.