BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP025268	= 780371	404 (0.700)	27 (0.070)	21/196	8.0	10.5%	intergenic (+100/‑47)	CXP41_RS04105/CXP41_RS04110	tRNA‑Lys/tRNA‑Lys
*	?	NZ_CP025268	780860 =	170 (0.410)	27 (0.070)	21/196	8.0	10.5%	intergenic (+3/‑274)	CXP41_RS04120/nadA	RtT sRNA/quinolinate synthase NadA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 404 total aligned reads displayed.

ATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACT  >  NZ_CP025268/780233‑780510

aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTCACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATc                                                                                                                                            >  2:1200637/1‑140 (MQ=255)

aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATc                                                                                                                                            >  2:5920571/1‑140 (MQ=255)

   aaTTGGTCGCTGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTa                                                                                                                                         <  1:1648310/140‑1 (MQ=255)

     ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTaaa                                                                                                                                       >  2:2417557/1‑140 (MQ=255)

           gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTgg                                                                                                                                 >  1:7290962/1‑140 (MQ=255)

             aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCGGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCAGCACGACCCACCCATCGTAAAGATTGGcc                                                                                                                               >  1:7818798/1‑140 (MQ=255)

                         tGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAAt                                                                                                                   >  1:8562228/1‑140 (MQ=255)

                           cACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCt                                                                                                                 >  1:7195899/1‑140 (MQ=255)

                           cACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGAGTGGCCCCGAGTAAAATTCt                                                                                                                 >  1:9389034/1‑140 (MQ=255)

                              cccccACCAGTTTCAACATCCCACACAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAACGATTGGCCCCGAGTAAAAATCTTTc                                                                                                              <  1:7579773/138‑1 (MQ=18)

                                cccACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAg                                                                                                            >  2:7719795/1‑140 (MQ=255)

                                cccACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAg                                                                                                            >  2:1790260/1‑140 (MQ=255)

                                cccACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAg                                                                                                            >  1:3417763/1‑140 (MQ=255)

                                cccACCAGTTTTAACATCAAACTCAGATGTGAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGAGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAg                                                                                                            >  2:4060660/1‑140 (MQ=255)

                                   accaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTa                                                                                                         >  2:8608911/1‑140 (MQ=255)

                                    ccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTaa                                                                                                        <  2:1455218/140‑1 (MQ=255)

                                     caGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAac                                                                                                       >  1:1777022/1‑140 (MQ=255)

                                      aGTTTTATCATCCAACACAGATGTTAAGCGTGAAGGATAACGTTGCGCCCGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAaca                                                                                                      <  2:7003861/140‑1 (MQ=255)

                                      aGTATTAACATCCACCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAaca                                                                                                      <  1:4211102/140‑1 (MQ=255)

                                       gTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAacac                                                                                                     <  2:2819141/140‑1 (MQ=255)

                                        ttttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACAcc                                                                                                    <  2:9072235/140‑1 (MQ=255)

                                        tattAACATCAAACTCAGATGTTAATCGTGACGCATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATNCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCANGTAACAcc                                                                                                    <  1:6324647/138‑1 (MQ=255)

                                          ttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCg                                                                                                  <  1:3485585/140‑1 (MQ=255)

                                          ttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGAGAAGCGAGACAGCCTGCACGAGCCACAAAACTAAAAGATTGTCCCCGAGTAAAAAGCGGACAGGTCACAcgcg                                                                                                  >  1:2512448/1‑140 (MQ=18)

                                            aaCATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTa                                                                                                >  1:3680524/1‑140 (MQ=255)

                                            aaCATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTa                                                                                                <  2:3933756/140‑1 (MQ=255)

                                            aaCATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTa                                                                                                <  1:5639965/140‑1 (MQ=255)

                                             aCATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTAt                                                                                               <  2:6686154/140‑1 (MQ=255)

                                                tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCTTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGACCCGAGTAAAAATCTTTCAGGTAACACCCGAATggt                                                                                            >  2:2276073/1‑139 (MQ=255)

                                                  gaagacAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTc                                                                                          >  2:8312140/6‑140 (MQ=255)

                                                  aaaCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATgg                                                                                             <  2:4164413/137‑1 (MQ=255)

                                                  aaaCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTc                                                                                          >  1:4455946/1‑140 (MQ=255)

                                                  aaaCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTc                                                                                          >  1:9559925/1‑140 (MQ=255)

                                                  aaaCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAAACATACAGGTAACACCCGAATGGGTc                                                                                          >  1:7673214/1‑140 (MQ=255)

                                                        aGATGTTATGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGc                                                                                    <  1:5098539/140‑1 (MQ=255)

                                                        aGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGc                                                                                    <  2:3951720/140‑1 (MQ=255)

                                                        aGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGc                                                                                    <  2:8109762/140‑1 (MQ=255)

                                                          ctGTTAAGCGTGTAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                                                                                  <  1:6729808/139‑1 (MQ=255)

                                                          aTGTTAAGCGTGTAGTATAACGTTGCGCCCGCCACGGGCCGTAGGGCGCTCGAATCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                                                                                  <  1:615607/140‑1 (MQ=25)

                                                          aTGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTCTTAAAGATTGGCACCGAGTAAAAATCTTTCAGGTAACACCCGAGTGGGTCGTTAGCTc                                                                                  >  2:5227696/1‑140 (MQ=18)

                                                          aTGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                                                                                  <  1:2166293/140‑1 (MQ=255)

                                                          aTGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                                                                                  <  1:8312140/140‑1 (MQ=255)

                                                          aTGATAAGCCTGAAGGCTATCGTTGCGGCATCTTCGGCCCGTAGTGCGCTCTAAGCGAGTGATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                                                                                  <  1:1930709/140‑1 (MQ=255)

                                                           tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCATAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                                                                                 <  2:5012458/140‑1 (MQ=255)

                                                           tGTTAAGCGTGAAGGATAACGTTGCGACAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                                                                                 <  1:153006/140‑1 (MQ=255)

                                                             ttAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGt                                                                               <  1:9026944/140‑1 (MQ=255)

                                                                aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCCGCACGACCCACCAATCTTATAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTggg                                                                            >  2:7873438/1‑140 (MQ=255)

                                                                  cGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                                                          >  2:4597931/1‑140 (MQ=255)

                                                                  cGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                                                          <  1:1136261/140‑1 (MQ=255)

                                                                  cGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTa                                                                          >  1:2744512/1‑140 (MQ=255)

                                                                    tGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTaga                                                                        >  2:9313117/1‑140 (MQ=255)

                                                                     gAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTagag                                                                       <  1:7471147/140‑1 (MQ=255)

                                                                      aaGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAATGATTGGCCCCGAGTAAAAATCATTCAGGTAACACCCGTATGGGTAGTTAGCTCTGTGGGTagatc                                                                      >  1:298787/1‑138 (MQ=25)

                                                                       aGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTCTTAAAGATTGGCCCCGAGTAAAAATCttt                                                                                                               <  1:5498935/98‑1 (MQ=255)

                                                                          aTAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGtt                                                                  <  2:5840622/140‑1 (MQ=255)

                                                                                 tGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTc                                                                                  <  2:3271999/117‑1 (MQ=255)

                                                                                 tGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATAGGCCCCGAGTAAAAATCTTTCAGGTAACACCAGTATGTGTCGTTAGCTAAGTTGGTAGATCAGTTGACtttt                                                           >  1:2607054/1‑140 (MQ=37)

                                                                                   cgtcAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                                                                                 >  2:3575455/4‑116 (MQ=255)

                                                                                   cgtcAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCa                                                                                 <  1:3575455/113‑1 (MQ=255)

                                                                                   cgcCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTaa                                                         >  2:1512194/1‑140 (MQ=255)

                                                                                   cgcCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTaa                                                         >  2:7593464/1‑140 (MQ=255)

                                                                                   cgcCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTaa                                                         >  2:9001258/1‑140 (MQ=255)

                                                                                    gacAGCAACGGCCCGTAGGGCGAGCGAAGCGAGACAACCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAAACTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAAt                                                        <  2:6299920/138‑1 (MQ=255)

                                                                                              gCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCg                                              <  2:1721317/140‑1 (MQ=255)

                                                                                              gCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCg                                              <  1:8006591/140‑1 (MQ=255)

                                                                                                ccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCa                                            >  1:4702981/1‑140 (MQ=255)

                                                                                                ccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCa                                            <  1:1388440/140‑1 (MQ=255)

                                                                                                ccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGAGTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCa                                            <  2:9517945/140‑1 (MQ=255)

                                                                                                     gggCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTc                                       <  1:4942887/140‑1 (MQ=255)

                                                                                                      ggCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGAATGGGTCGTTAGCTCAGGTGGTAGAGCAGTTGACTTTTAATAAAGTGGTCGCAGGATct                                      >  2:3646364/1‑139 (MQ=38)

                                                                                                        cgtgcgaagggaGTCATCCTTAACGACACACCTCCCGTCTAGATTGCCCCAGAGAAAACAACGATCACGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGaa                                    <  1:819956/137‑1 (MQ=12)

                                                                                                        cgagcgaAGCGAGTCATCCTGCACGCCCCACCAATCTTAAACATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCCTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCTATTGGTCGCAGGTTCGaa                                    <  1:9525712/140‑1 (MQ=255)

                                                                                                        cgagcgaAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGTGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTATTCAATTGGTCGCAGGTTCGaa                                    >  1:6987161/1‑140 (MQ=255)

                                                                                                        cgagcgaAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGaa                                    >  1:9777005/1‑140 (MQ=255)

                                                                                                         gagcgaAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAAt                                   >  2:5723742/1‑140 (MQ=255)

                                                                                                          agcgaagcgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAGAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATc                                  >  1:1168837/1‑140 (MQ=255)

                                                                                                          agcgaagcgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACAACCGTATGGGTCGTTAGCTCAGTTGGTATAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATc                                  >  2:2128555/1‑140 (MQ=255)

                                                                                                           gcgaagcgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATcc                                 >  1:8720683/1‑140 (MQ=255)

                                                                                                               agcgaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCa                             <  1:1311620/140‑1 (MQ=255)

                                                                                                                    gTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGAcc                        <  2:7367856/140‑1 (MQ=255)

                                                                                                                            gCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAAtt                >  2:6489211/1‑140 (MQ=255)

                                                                                                                             cACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCGCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGGTCGAATCCTGCACGACCCACCAAttt               >  1:6519391/1‑140 (MQ=255)

                                                                                                                              aCGACCCACCAATCTTAAAGATTGGCCCCGAGTTAAAATCTTTGAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTa              <  1:1213376/140‑1 (MQ=255)

                                                                                                                              aCGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTGCGAATCCTGCACGACCCACCAATTTa              >  2:1307621/1‑140 (MQ=255)

                                                                                                                                gACCCACCAATCTTATAGATTGGCCCCGAGTAAATATCTTTCAGTTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTaaa            <  2:534965/140‑1 (MQ=255)

                                                                                                                                gACCCACCAATCTGAATGATGGGCCCCGAGTTAATATCTTTCAAGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTaaa            <  2:8392515/140‑1 (MQ=18)

                                                                                                                                  cccACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAgg          <  1:1016633/140‑1 (MQ=255)

                                                                                                                                  cccACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAgg          <  2:4711392/140‑1 (MQ=255)

                                                                                                                                  cccACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGAATGGGTCGTTAGCTCAGTTGGTAGAGCAGGTGACTTTAAATCTATTGGTCGCAGGTTCGAATCCTGGACGACCCACCAATGTAAAgg          >  2:1606174/1‑140 (MQ=21)

                                                                                                                                    caccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCATTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtg        <  1:3856022/140‑1 (MQ=255)

                                                                                                                                      ccaCTCTAAAAGTATGGGGCCGTGTTAAAATCTTTCACCTAACCCCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt      <  1:2326868/140‑1 (MQ=17)

                                                                                                                                      ccaATCTTAAAGATTGGCCCCGAGTAAATATCTTTGAGGTAACCCCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt      <  1:1849262/140‑1 (MQ=255)

                                                                                                                                      ccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt      <  2:8227426/140‑1 (MQ=255)

                                                                                                                                      ccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt      <  2:6178847/140‑1 (MQ=255)

                                                                                                                                      ccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt      <  1:3193510/140‑1 (MQ=255)

                                                                                                                                      ccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt      <  1:5290867/140‑1 (MQ=255)

                                                                                                                                      ccaATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAggtggt      <  1:4007352/140‑1 (MQ=255)

                                                                                                                                        aaTCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTa    <  1:6489211/140‑1 (MQ=255)

                                                                                                                                        aaTCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCAGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTa    <  2:2732018/140‑1 (MQ=255)

                                                                                                                                         aTCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTAc   <  2:7195899/140‑1 (MQ=255)

ATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACT  >  NZ_CP025268/780233‑780510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.