| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 3549238 | 417 (1.410) | 39 (0.150) +TTTTTTAATGATACGGCGAC |
26/236 | 4.7 | 10.2% | coding (1519/2085 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | NZ_CP025268 | 3549259 = | 384 (1.300) | coding (1498/2085 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP025268/3549123‑3549238‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACG > NZ_CP025268/3549259‑3549394 |||||||||||||||||||| gaCGCAACCGCCATCGACTCCGCCGGATACGCTTTCTGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACC < 2:3279010/138‑1cCCGCAACCGCCATCGACGGCTCCGGATACGCTTTCGGTCCCCGGAACGTCATCTCGTGGTCGTTTTCGAAATAGAGCACCTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACC < 2:3279266/139‑1GCCGCAACCGCCATAGACTGCACCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCATTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTCCCTTTTTTAATGATACGGCGACCACC < 2:190449/140‑1 GCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAG < 2:3253353/140‑1 ctccACTGCTCCGGCTACCCTTTCGGTTCACGGACCGTCTTCTCGTGGTCGTTTTCGAAATAGACCACTTTGTAAGAGTACCCACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:2607894/136‑1 ctaGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGCTCTTTTTCGAAATAGCGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:4301784/137‑1 ATCTACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:4174232/140‑1 ATCGACTGCTCCGGATACGCTTTCTGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:4301796/140‑1 ATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTCATGATCGGTCCGCCACCGAGATCTACACC < 2:823466/140‑1 ATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACC < 2:1778884/140‑1 ATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTCTTTCATGATCCGGCCGCCACCGAGATCTACACC < 2:3392114/140‑1 CGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCTTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAA < 2:5047754/140‑1 GACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAAT < 2:2536412/140‑1 CTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGATTTTAATTATACGGCGACCACCGAGATCTACACCAATCA < 2:758855/140‑1 CTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCA < 2:3524677/140‑1 CCGGATACGCTTCCGGCGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTCTTTAACGATACGGCCACCACCGAGATCTACACCAATCACCATA < 2:1620437/140‑1 TACGCTTTCTGCACACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGGCCACCGAGATCTACACCAATCACCATACAGCG < 2:2670507/140‑1 TACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTGTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTCTTTAACGACCCGGAGGGTACCGAGATCTACACCAATCACCATACAGCG < 2:1139391/140‑1 GCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGACACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATG < 2:1929434/140‑1 TTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTCTTTAATGATCCGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGAC < 2:971984/140‑1 AACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGACCCGGACGCCACCGAGATCTACACCAAGCACCATACAGCGATGACGTGTACGTTCGAG < 2:2964943/140‑1 CGTCGTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTG < 2:3436067/140‑1 CTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTCTTTATCGATCGGGACGCTACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCA < 2:4994129/140‑1 CGTGGTCCTTTTCGAAATATAGCACTTTGTAAGCGTACACACCGCTGTTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATC < 2:4143237/140‑1 CGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGC < 2:1021372/140‑1 TCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTCCTTTCATTATCGGTCGGCCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATC < 2:4877605/140‑1 AGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACC < 2:1838496/140‑1 AGCACTTTGTACGAGTACACCCCGCCGCTGCGCAGCTTACCGTTTTTCATGATCCGGCGGCCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGG < 2:2677463/140‑1 ccaccaTGTACGAGCACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGA < 2:148707/134‑1 ccaaTTTGTAAGAGTACAGACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGA < 2:826585/136‑1 GCACTTTGTAAGAGTACATACCGCTCCTGCACAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGA < 2:1776569/140‑1 GCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGATTTTCCCGACCCGGCCGCTACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGA < 2:3031191/140‑1 CACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCGTTTTTCATTACACGTCCACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGAT < 2:1670620/140‑1 cCTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATCCGGCCACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATA < 2:2600732/139‑1 GTAAGACTACACACCGCTGCTGCGCAGCTTACCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAA < 2:61342/140‑1 GCAGCTTACCTTCTTTCATGATCCGGACGCCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTC < 2:2900886/140‑1 tccaCTTTTATCACGACACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCC < 2:4439154/136‑1 taatTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCA < 2:1144966/136‑1 ccgTTTTTAATGATCCGTCGGCCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATA < 2:4507992/137‑1 CCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATA < 2:1435835/140‑1 CCTTTTTTAATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATA < 2:3002851/140‑1 TTAATGATCCGGCCACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTAT < 2:2985833/140‑1 aacGATACGGCCACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCC < 2:1245164/137‑1 AATGATACGGCGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCC < 2:3326285/140‑1 CGACCACCGAGATCTACACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACG < 2:224233/140‑1 |||||||||||||||||||| GCCGCAACCGCCATCGACTGCTCCGGATACGCTTTCGGTGCACGGAACGTCTTCTCGTGGTCGTTTTCGAAATAGAGCACTTTGTAAGAGTACACACCGCTGCTGCGCAGCTTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP025268/3549123‑3549238‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACCGAGATCTTCACCAATCACCATACAGCGATGACGTTTACTTTCGAGTGCCAGAATCGAGAGCAGATCATCCACCGGATAGTGAACATACGCGCCCTGATCTGCCGTCTCGCCATACGGTATCCACCACAAACG > NZ_CP025268/3549259‑3549394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |