| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP025268 | 262,011 | Δ34,307 bp | ykfI–intF | 46 genes ykfI, yafW, ykfH, ykfG, yafX, ykfF, CXP41_RS01315, CXP41_RS01320, CXP41_RS01325, CXP41_RS01330, yafZ, ykfA, perR, CXP41_RS01355, CXP41_RS01360, CXP41_RS01365, ykfC, CXP41_RS01385, mmuP, mmuM, fbpC, CXP41_RS01405, CXP41_RS01410, CXP41_RS01410, CXP41_RS01420, CXP41_RS01425, yagB, CXP41_RS24560, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, CXP41_RS01470, CXP41_RS01480, CXP41_RS01480, CXP41_RS01490, yagK, yagL, CXP41_RS01505, ykgV, CXP41_RS01515, intF |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP025268 | 262011 | 296317 | 34307 | 357 [0] | [2] 358 | ykfI–intF | ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 262010 | 0 (0.000) | 206 (1.240) | 58/156 | 0.1 | 100% | intergenic (+11/+371) | CXP41_RS01280/ykfI | tRNA‑Thr/type IV toxin‑antitoxin system toxin YkfI |
| ? | NZ_CP025268 | 296318 = | 0 (0.000) | intergenic (‑170/+115) | intF/CXP41_RS01530 | integrase family protein/LysR substrate‑binding domain‑containing protein | |||||
Only 100 of 358 total aligned reads displayed.
GCTATAACTTGGTGTTTTATAATATAAAGTATGTTGTTTTGATTGATTGCTCAAGTAGTTAAAAATGCATTAACATCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTC > NZ_CP025268/296182‑296456 | ttttaaccttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGt < 1:3970004‑M2/4‑1 (MQ=255) aaccttgtccaccgtgattcacgttagtgaacatgtcctttcagggccgatatagctcagttgctagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAcc < 2:1896077‑M2/8‑1 (MQ=255) accttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAccc < 1:3932178‑M2/9‑1 (MQ=255) accttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAccc < 2:5004158‑M2/9‑1 (MQ=255) ccttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAcccc < 1:3304259‑M2/10‑1 (MQ=255) cttgtccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCa < 2:3700742‑M2/11‑1 (MQ=255) ccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATAttt < 2:1345918‑M2/16‑1 (MQ=255) ccaccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATAttt < 1:3490527‑M2/16‑1 (MQ=255) ccgtgattcacgttcgttaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTaaa < 2:3812592‑M2/19‑1 (MQ=255) ccgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTaaa < 1:1028878‑M2/19‑1 (MQ=255) cgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAAt > 1:1387623‑M2/121‑140 (MQ=255) cgtgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAAt > 1:1911749‑M2/121‑140 (MQ=255) tgattcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATac > 1:4461929‑M2/119‑140 (MQ=255) attcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATacac > 2:1191332‑M2/117‑140 (MQ=255) attcacgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATacac > 1:4762048‑M2/117‑140 (MQ=255) attcacgttcgtgaacatgtcctttcagggccgatatagctcagtgggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATacac > 2:4179599‑M2/117‑140 (MQ=255) ttcacgttcgtgaacatgtcctttcagggccgatatcgctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc < 1:1355482‑M2/25‑1 (MQ=255) ttcacgttcgtgaacatgtcctttcagggccgatatagctcagttgctagagcagcgcattcgtaatgcgaaggtcgtaggtgcgactcctattagcggcaccattaaaagcaaaGAGTTACACCATATGTAAATAcacc < 2:3604128‑M2/25‑1 (MQ=255) ttcacattcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc < 2:4478940‑M2/25‑1 (MQ=255) gttcgtgatcatgtcctttccgggccgatatagctcagttggtagagcagcgcattcgtcatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGtt < 2:3296330‑M2/30‑1 (MQ=255) gttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGtt > 1:2325039‑M2/111‑140 (MQ=255) gttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggtgcgactcctattatcggcaccattaaaatcacaGAGTTACCCCATATTTAAATACACCACGtt < 2:2300395‑M2/30‑1 (MQ=255) tgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTtcctc < 1:629349‑M2/35‑1 (MQ=255) acatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgcctcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCtg < 2:514162‑M2/38‑1 (MQ=255) acatgtcctttcacggccactatagcgcagttggtagagcagcgcagtcgtaatgcgaaagtcgtaggttcgactcctattatcggcaccattaaaatcaaaGACTTACCCCATATTTAAATACACCACGTTTCCTCCtg < 2:2026492‑M2/38‑1 (MQ=255) atgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCtgtg < 1:1603288‑M2/40‑1 (MQ=255) gtcctttcagggccgctatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTCTGcc > 2:711172‑M2/99‑140 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTAccc > 2:3744124‑M2/99‑107 (MQ=255) gtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGcc > 2:2927402‑M2/99‑140 (MQ=255) cctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGt > 2:2764710‑M2/97‑140 (MQ=255) ttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTAtt < 2:3178225‑M2/47‑1 (MQ=255) tcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTAttt > 1:411927‑M2/93‑140 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattctcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 2:4701547‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 2:1794015‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 2:3616100‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 1:3652360‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 1:3221169‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 1:3164421‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 2:4293654‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTtgtg < 1:770801‑M2/51‑1 (MQ=255) gggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattaacggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTACTCCTGTGCCGTATTtgtg < 1:2577938‑M2/51‑1 (MQ=255) ggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGc > 2:3991815‑M2/89‑140 (MQ=255) agctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAAc < 2:2038583‑M2/61‑1 (MQ=255) gctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctatgatcggaaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAAcc > 2:1059541‑M2/79‑140 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAcacc > 1:3822976‑M2/78‑102 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCt > 1:4283859‑M2/78‑140 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCt > 2:4425143‑M2/78‑140 (MQ=255) ctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCt > 1:2210335‑M2/78‑140 (MQ=255) gttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGc > 1:1454618‑M2/74‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 1:562338‑M2/73‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 1:1811328‑M2/73‑140 (MQ=255) ttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCa > 2:794575‑M2/73‑140 (MQ=255) gtagagcagcgcattcgtaatgcgcaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAAtt < 2:17314‑M2/71‑1 (MQ=255) gtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAAtt < 2:256711‑M2/71‑1 (MQ=255) agagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtca > 1:3708132‑M2/68‑140 (MQ=255) gcagcgcattcgtaatgcgaaggtcgtaggttcgactcctatcatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATtcatca < 1:110052‑M2/76‑1 (MQ=255) cagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCaa > 1:1268386‑M2/64‑140 (MQ=255) agcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCaaa > 2:1005067‑M2/63‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAAt > 1:5094960‑M2/61‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAAt > 1:3457768‑M2/61‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAAt > 1:2606540‑M2/61‑140 (MQ=255) cgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAAt > 1:2380417‑M2/61‑140 (MQ=255) gcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATa < 1:3601684‑M2/81‑1 (MQ=255) tcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGTCAATTCATCAAAATACTGt > 2:3908228‑M2/56‑140 (MQ=255) cgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGtt < 2:858808‑M2/86‑1 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 1:964891‑M2/87‑1 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 1:3791489‑M2/87‑1 (MQ=255) gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 1:4897957‑M2/87‑1 (MQ=255) ctaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCCCGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTc < 2:1094796‑M2/87‑1 (MQ=255) gcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCTGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACa < 1:4697637‑M2/92‑1 (MQ=255) gcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACa < 1:5003798‑M2/92‑1 (MQ=255) cgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAATTACACCACGTTTCCTCCTGGGCCGTATTTGTGCCATTGTAACCTTTGCAATTCATCAAAGTACTGTTCTGatat > 2:1970387‑M2/48‑140 (MQ=255) aaggtcgtaggttcgactcctattatcggcaccattaaaatcaaaCAGTTACCACATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCa > 2:4085951‑M2/46‑140 (MQ=255) ggtcgtatgttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:1600800‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCCTTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:4655714‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 1:2799218‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:2740959‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 2:3103731‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 1:1567947‑M2/97‑1 (MQ=255) ggtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAAACTTGGCAATTCATCAAAATACTGTTCTGACATCAgg < 1:165537‑M2/97‑1 (MQ=255) ggTCGTAGGCTCGCCTCCTATTATCGGCACCGTTAATATCAAAGATTTGCCCCATATTTAAATGCGCCACTTTTCCTCCTGTGCCGTATTTGTGCCATTGTAGCCTTGGCAATTCATCACAATACTGTTCTGACATCAgg < 2:3470612/140‑1 (MQ=255) gtcgtaggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGGGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGc > 1:2860381‑M2/43‑140 (MQ=255) tcggttcgcctcctattatcggcaccattgaaatccaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtg < 1:2674551‑M2/102‑1 (MQ=255) taggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtg < 2:562338‑M2/102‑1 (MQ=255) aggttcgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgc < 2:1257963‑M2/103‑1 (MQ=255) cgactcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtg > 1:327672‑M2/33‑140 (MQ=255) actcctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAgtgcaggtgca < 1:3089740‑M2/110‑1 (MQ=255) ctattatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACa > 1:2152505‑M2/27‑140 (MQ=255) attatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAACTACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAtt < 2:2401337‑M2/116‑1 (MQ=255) attatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTACTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAtt < 1:2336376‑M2/116‑1 (MQ=255) attatcggcaccattaaaatcaaaGAGTTACCCCATATTTAAATAAACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACAtt < 1:439707‑M2/116‑1 (MQ=255) ggcaccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGcc < 2:4773953‑M2/122‑1 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTcctcct > 2:1456446‑M2/17‑53 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCaa > 2:4394547‑M2/17‑140 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCaa > 1:710508‑M2/17‑140 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCaa > 1:2034850‑M2/17‑140 (MQ=255) caccattaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCaa > 1:4627512‑M2/17‑140 (MQ=255) ttaaaatcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATtgct > 1:1150529‑M2/12‑140 (MQ=255) tcaaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATCGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCACTTGCTgccgcc < 1:4231325‑M2/135‑1 (MQ=255) aaaGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTTCCATTGTAACCTTTGCAATTCATCAAAATACTGTTCTGACATCAGTCAGTGCAGGTGCAGACATTTAAGCCAATTGCCGCCGCCAt > 2:1505060‑M2/4‑140 (MQ=255) | GCTATAACTTGGTGTTTTATAATATAAAGTATGTTGTTTTGATTGATTGCTCAAGTAGTTAAAAATGCATTAACATCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTTTCCTCCTGTGCCGTATTTGTGCCATTGTAACCTTGGCAATTCATCAAAATACTGTTCTGACATCAGGCAGTGCAGGTGCAGACATTTAAGCCAATTGCTGCCGCCATTC > NZ_CP025268/296182‑296456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |