BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP025268	= 780271	543 (0.800)	39 (0.070)	23/238	10.5	9.4%	noncoding (76/76 nt)	CXP41_RS04105	tRNA‑Lys
*	?	NZ_CP025268	780858 =	280 (0.480)	39 (0.070)	23/238	10.5	9.4%	intergenic (+1/‑276)	CXP41_RS04120/nadA	RtT sRNA/quinolinate synthase NadA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 389 total aligned reads displayed.

AAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTGC  >  NZ_CP025268/780719‑780997

       cTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTaaaa                                                                                                                                      >  1:5655360/1‑140 (MQ=32)

       cTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCAGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTaaaa                                                                                                                                      >  2:2701483/1‑140 (MQ=17)

          ttttGCTTTCTGCGATACTCAACGATTCGAACCTGCAGCAGGTTTGTGTTTTGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAg                                                                                                                                   <  1:8501956/140‑1 (MQ=11)

          ttttGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAg                                                                                                                                   <  1:7404464/140‑1 (MQ=32)

          ttttGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAg                                                                                                                                   <  1:7191348/140‑1 (MQ=32)

          ttttGATTTCTGCTATACTAAATTATTCTAACCTGCAGCAGTTTTGTTTTGAGCGCTGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAg                                                                                                                                   <  1:5549158/140‑1 (MQ=11)

           tttGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAgc                                                                                                                                  <  1:9453105/140‑1 (MQ=17)

           tttGCTATCTGCGAAACCCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCGCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAgc                                                                                                                                  <  1:5960434/140‑1 (MQ=12)

                                    tctaaCCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACACCGGAGCCGCTCTCGGCGACGGCCCGAAGGGCGAG‑CGACG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAACGCGCTTTTTTGCTAtt                                                                                                         <  2:3269751/137‑1 (MQ=11)

                                      gAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCa                                                                                                       >  1:2697147/1‑140 (MQ=32)

                                        aCCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAgg                                                                                                     <  1:11503756/140‑1 (MQ=33)

                                            gcagcaGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATc                                                                                                 <  2:9593839/140‑1 (MQ=37)

                                            gcagcaGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATc                                                                                                 >  2:8316391/1‑140 (MQ=37)

                                            gcagcaGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATc                                                                                                 <  1:11205968/140‑1 (MQ=37)

                                              agcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCt                                                                                               <  1:1206340/140‑1 (MQ=39)

                                              agcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCt                                                                                               <  1:1427859/140‑1 (MQ=39)

                                                cagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCa                                                                                             >  2:5424313/1‑140 (MQ=40)

                                                     ttgagttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTc                                                                                        >  2:5722329/1‑140 (MQ=255)

                                                      tgagttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCa                                                                                       <  1:3972494/140‑1 (MQ=255)

                                                             agCGCAGCGAATCAACGTAGCCGCTCGAGGAGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                <  2:2440750/140‑1 (MQ=255)

                                                             agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                >  1:1909974/1‑140 (MQ=255)

                                                             agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                <  2:4740016/140‑1 (MQ=255)

                                                             agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                >  2:3569153/1‑140 (MQ=255)

                                                             agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                >  2:10423821/1‑140 (MQ=255)

                                                             agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTa                                                                                >  1:110938/1‑140 (MQ=255)

                                                               cgcAGCGAAACCACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTaaa                                                                              <  1:3373389/140‑1 (MQ=255)

                                                               cgcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTaaa                                                                              >  2:6159376/1‑140 (MQ=255)

                                                                 cAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAAcc                                                                            <  1:3627857/140‑1 (MQ=255)

                                                                  aGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCt                                                                           >  1:5074100/1‑140 (MQ=255)

                                                                        ccaacGGAGGCGGTCGCGGCGACGGCCCGAACGGCGAG‑CGAAG‑CGTGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGAc                                                                     <  2:8673266/139‑1 (MQ=255)

                                                                          aacGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACAt                                                                   <  2:6687013/140‑1 (MQ=255)

                                                                          aacGGAGCCGCTCGAGTCGACTTAACGAATGGCGAG‑CGAAG‑CTAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACAt                                                                   <  1:1101348/140‑1 (MQ=18)

                                                                              gAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTc                                                               <  1:1586095/140‑1 (MQ=255)

                                                                              gAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTc                                                               >  1:225372/1‑140 (MQ=255)

                                                                                gCCGCTCGCGGCGACGGCCCGATGGGCGAG‑CGAAG‑CGAGTCAGACTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTCTTCCGGCTTCCTCAATGACACGGTGTAAACCGGATGTCATCGTCag                                                             >  2:11246802/1‑140 (MQ=14)

                                                                                 ccGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCaga                                                            <  2:4108636/140‑1 (MQ=255)

                                                                                      gttagcaaCGGCCCGAAGGGCGAGACGAAGTCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCAATTTGTAAACCTGATGACATCGTCAGAGCt                                                         >  1:7913580/8‑140 (MQ=21)

                                                                                      gtccgccaCGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  1:10050332/133‑1 (MQ=255)

                                                                                      ggcggcgACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCGTa                                                       <  1:10774077/139‑1 (MQ=255)

                                                                                      cgcgGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  1:6651787/140‑1 (MQ=255)

                                                                                      cgcgGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  1:3172855/140‑1 (MQ=255)

                                                                                      cgcgGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  2:1719990/140‑1 (MQ=255)

                                                                                      cgcgGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTa                                                       <  1:2342927/140‑1 (MQ=255)

                                                                                          gcgACGGCTCGACGGGCGAG‑CGCAG‑CGAGTAATCCTGCACGACCCACCAATGTAAACAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACtgt                                                   <  2:11384731/140‑1 (MQ=25)

                                                                                          gcgACCGCCCGACTGGCGAG‑CGCAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAACGCGCTATTTTGCTATTCAGGCATCCTCACAGTCACTTTGTAAACCGGAGGACATCGACAGAGCTTACtgt                                                   <  2:10653598/140‑1 (MQ=18)

                                                                                          gagACGGAACGATGGGTGAG‑CGAAG‑AGTGTCATACTGCTCGACCCACCAATTTAAAAAATCTCACTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTACACTTTTTAAACCTGATGACATCGTCAGAGCTTACtgt                                                   <  2:6278427/138‑1 (MQ=21)

                                                                                           cgACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCACTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACtgtg                                                  <  2:4396203/140‑1 (MQ=255)

                                                                                           cgACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACtgtg                                                  <  2:4885368/140‑1 (MQ=255)

                                                                                           cgACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACtgtg                                                  <  2:928216/140‑1 (MQ=255)

                                                                                             actgCCCGTAGGGCGAG‑CGAAG‑CGAGTCTTCCTGCACGACCCACCAATGTAAAATAGCGCCCTAAAGGCTCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgca                                                <  1:7610327/137‑1 (MQ=25)

                                                                                               ggCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTACAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  2:3064574/140‑1 (MQ=255)

                                                                                               ggCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAACGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  2:2462096/140‑1 (MQ=255)

                                                                                               ggCCCGAAGGGCGAG‑CGACG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  2:9453961/140‑1 (MQ=255)

                                                                                               ggCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  1:8699046/140‑1 (MQ=255)

                                                                                               ggCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  2:4861207/140‑1 (MQ=255)

                                                                                               ggCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  1:9916635/140‑1 (MQ=255)

                                                                                               ggCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  1:4864979/140‑1 (MQ=255)

                                                                                               ggCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              <  1:8138623/140‑1 (MQ=255)

                                                                                                        tgagtg‑cgcag‑ctaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTAt                                     <  1:4980221/135‑1 (MQ=255)

                                                                                                        ggCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTAt                                     <  1:7679986/140‑1 (MQ=255)

                                                                                                         gcgag‑cgaAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATg                                    <  2:8863719/140‑1 (MQ=255)

                                                                                                          cgcg‑cgaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTACAGGCGCTTTATTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGt                                   <  2:5105835/137‑1 (MQ=255)

                                                                                                           gag‑cgaAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTc                                  >  2:10818085/1‑140 (MQ=255)

                                                                                                           gag‑cgaAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTc                                  >  1:11320994/1‑140 (MQ=255)

                                                                                                            ag‑cgaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCg                                 >  1:6223640/1‑140 (MQ=255)

                                                                                                            ag‑cgaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCg                                 <  1:3771186/140‑1 (MQ=255)

                                                                                                            ag‑cgaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCg                                 >  1:7731515/1‑140 (MQ=255)

                                                                                                             g‑cgaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTgcaag                                              >  2:468947/1‑126 (MQ=255)

                                                                                                               cgaag‑cgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGt                               <  2:3741650/140‑1 (MQ=255)

                                                                                                                      gagaCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCAAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAAtt                         <  2:7930368/140‑1 (MQ=255)

                                                                                                                      gaGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAAtt                         <  2:5292498/140‑1 (MQ=255)

                                                                                                                               tGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTaaa                <  1:6503438/140‑1 (MQ=255)

                                                                                                                                 cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTaaa                <  2:7374338/138‑1 (MQ=255)

                                                                                                                                 cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAAt              >  1:440321/1‑140 (MQ=255)

                                                                                                                                 cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATGAGTCGTAAAAt              >  2:4176105/1‑140 (MQ=255)

                                                                                                                                    gACCCACCAATGTAAAAAAGCGCCCTAACGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:8890439/140‑1 (MQ=255)

                                                                                                                                    gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:4056113/140‑1 (MQ=255)

                                                                                                                                    gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:10400150/140‑1 (MQ=255)

                                                                                                                                    gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  2:5940417/140‑1 (MQ=255)

                                                                                                                                    gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGAc           <  1:5255089/140‑1 (MQ=255)

                                                                                                                                    gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTGTTGCTATTCAGGCATCCTCAATTTCACTTTGTAATCCTGATGACATAGTCAGAGCGTACTGTGCACGCACCTCGATGGCGGTGGTATTAGGCGTAAAATgtc           >  2:6504774/1‑138 (MQ=37)

                                                                                                                                     aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTATTTGCAATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACg          <  1:296001/140‑1 (MQ=255)

                                                                                                                                      cccACCAATGTAACAAAGCGCCCTAACGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         <  1:8295536/140‑1 (MQ=255)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCg                                                                 >  2:11041011/1‑84 (MQ=255)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCtt                                                        <  1:2187809/93‑1 (MQ=255)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  1:10600284/1‑140 (MQ=255)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  2:1008763/1‑140 (MQ=255)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  1:4417502/1‑140 (MQ=255)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  1:3818995/1‑140 (MQ=255)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTAACGAATCATCAATTTCAGTATGTAAACCTGATGACAGCGTAGGTGCTAACTGAGCAGGCTCCGCTCGGGCGGTGGAAGGAGTCGGAAATTGACGc         >  2:1532633/1‑140 (MQ=12)

                                                                                                                                      cccACCAATGTAAAAAAGCGCCCGAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGc         >  2:2975806/1‑140 (MQ=255)

                                                                                                                                       ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCa        <  1:6977783/140‑1 (MQ=255)

                                                                                                                                       ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCa        <  1:3011509/140‑1 (MQ=255)

                                                                                                                                        caccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCAt       >  2:2221787/1‑140 (MQ=255)

                                                                                                                                         accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATc      >  1:10123419/1‑140 (MQ=255)

                                                                                                                                         accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATc      >  1:4697621/1‑140 (MQ=255)

                                                                                                                                          ccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATcc     <  2:8523694/140‑1 (MQ=255)

                                                                                                                                           caATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCt    >  2:3959987/1‑140 (MQ=255)

                                                                                                                                           caATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCt    >  1:4579361/1‑140 (MQ=255)

                                                                                                                                            aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTg   <  1:9947870/140‑1 (MQ=255)

AAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTGTAAACCTGATGACATCGTCAGAGCTTACTGTGCAAGCAACTCTATGTCGGTGGAATTAGGCGTAAAATGACGCATCCTGC  >  NZ_CP025268/780719‑780997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.