| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 1553632 | 190 (0.630) | 10 (0.050) +ACGAAGAGGATAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA |
7/180 | 8.7 | 7.3% | coding (1413/3048 nt) | fdnG | formate dehydrogenase‑N subunit alpha |
| ? | NZ_CP025268 | 1553680 = | 198 (0.660) | coding (1461/3048 nt) | fdnG | formate dehydrogenase‑N subunit alpha | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGATCCAGTTGCTGCTCGGTAACATGGGTATGGCCGGTGGCGGCGTGAACGCATTGCGTGGTCACTCCAACATTCAGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP025268/1553498‑1553632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAAGCGACGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCGAAGTTCTTCGTTAGCCTGATGAAATCTTTCTATGGCGATG > NZ_CP025268/1553680‑1553765 ||||||||||||||||||||||||||||||||||||||||||||||| ATGATCCAGTTGCTGCTCGGTAACATGGGTATGGCCGGTGGCGGCGTGAACGCATTGCGTGGTCACTCCAACATTCAGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGACGga > 2:1510222/1‑138 GTATGGCCGGTGGCGGCGTGAACGCATTGCGTGGTCACTCCAACATTCAGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTCGCC > 2:4269627/1‑140 CCGGTGGCGGCGTGAACGCATTGCGTGGTCACTCCAACATTCAGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGACGAAAAGAATAGTGTAGATCTCGGTGGTCGCCGTATCA > 2:3601095/1‑140 GTGGCGGCGTGAACGCATTGCGTGGTCACTCCAACATTCAGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGTCGAAGAGGATAGTGGATTTGCCGTCGGTCGCCGAAGCATTA > 2:1305775/1‑140 TCCAACATTCAGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGAAAGCTACGCTGACTCATCAGGc > 2:3216023/1‑139 AGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGTCAAAGAAGATAGTGTAGATCTCGGTGGTCGCCGAAGCAAAAACAAAGAAAGCGACGCTGGCTGATCAGGTGAACTACTGG > 2:2286180/1‑140 ACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTCCCCGTATCATTAAAAAAGAAAGCGACGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCG > 2:89372/1‑140 CTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGTCGAAGAGGATGGTGTAGATCTCGGTGGACGCCGTAGCGTACACAAAGAAAGCGACGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCGAAGTTCTccct > 2:3496976/1‑136 CTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGAAAGCGACGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCGAAGTTCTTCGT > 2:979351/1‑140 CTCTCTACCAGCCTGCCAGGTCATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGCGGTCGCCGTATCATTAAAAACGAAAGCGACGCTGGCTGATCAGGTTAACCACTGGAGCAACTATCCGAAGTTCTTCGT > 2:3538473/1‑140 TCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGAAAGCGACGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCGAAGTTCTTCGTT > 2:1442573/1‑140 CGCTGCCGACGAAGAGGATAGTGTATATCCAGGTGGTTGCGGAAGCGATAAAGACGAAAGCGACGCTGGCTGCTCAGGTGAACTACTGGAGCAACTATACGAAGTTCTTCGTTAGCCTGATGAAATCTTTCTATGGCGAT > 2:925291/1‑140 CGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAGAAAGCGGCGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCGAAGTTCTTCGTTAGCCTGATGAAATCTTTCTATGGCGAT > 2:2293192/1‑140 GCTGCCGACGGAGAGGATAGTGTAGATCTCGGTGGTCGCCGAAGCGATCAAAAAGAAAGCGACGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCGAAGTTCTTCGTTAGCCTGATGAAATCTTTCTATGGCGATG > 2:2041025/1‑140 ||||||||||||||||||||||||||||||||||||||||||||||| ATGATCCAGTTGCTGCTCGGTAACATGGGTATGGCCGGTGGCGGCGTGAACGCATTGCGTGGTCACTCCAACATTCAGGGCTTGACTGACTTAGGCCTGCTCTCTACCAGCCTGCCAGGTTATCTGACGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP025268/1553498‑1553632‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAAGCGACGCTGGCTGATCAGGTGAACTACTGGAGCAACTATCCGAAGTTCTTCGTTAGCCTGATGAAATCTTTCTATGGCGATG > NZ_CP025268/1553680‑1553765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |