| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NZ_CP025268 | 3,864,444 | +GCC | pseudogene (1078/1613 nt) | CXP41_RS20140 ← | PTS sugar transporter subunit IIB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 3864444 | 2 (0.010) | 296 (1.010) +GCC |
92/268 | 0.2 | 99.3% | pseudogene (1078/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB |
| ? | NZ_CP025268 | 3864445 = | 2 (0.010) | pseudogene (1077/1613 nt) | CXP41_RS20140 | PTS sugar transporter subunit IIB | |||||
Only 100 of 313 total aligned reads displayed.
AGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAG > NZ_CP025268/3864306‑3864577 | aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGtt > 2:2913608/1‑140 (MQ=255)aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGtt < 2:2654950/140‑1 (MQ=255) gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgccca < 2:3507788‑M1/140‑6 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccac > 1:1198909‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccac < 1:4965320‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccac > 2:214356‑M1/1‑134 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccac < 2:2750095‑M1/140‑7 (MQ=255) cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACAGCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccac < 2:663785‑M1/140‑7 (MQ=255) ggAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccacc < 2:2825798‑M1/140‑8 (MQ=255) aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacc > 2:938810‑M1/1‑128 (MQ=255) ccACTAAGTACAGCAGTGTAAAGCATCACCCTATGGCGCTTTGGGTCAGCATCATATCCGCGTGGTTGCTTAACCTCGGGACCCAGTTTCGCGGTAAACCCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacca < 2:1222788/140‑8 (MQ=255) ccACGAAGTACGGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacca < 2:4532729‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacca < 1:3295897‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacca < 2:58570‑M1/140‑14 (MQ=255) ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacacca < 2:1233114‑M1/140‑14 (MQ=255) ccgAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaa < 2:405793‑M1/139‑16 (MQ=255) cGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaag < 1:2592865‑M1/140‑17 (MQ=255) aaGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagag < 2:2185267‑M1/140‑19 (MQ=255) aGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagaga < 1:4219562‑M1/140‑20 (MQ=255) cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagataca < 1:2962133‑M1/140‑24 (MQ=255) gcagGGTACAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacatt < 1:285166‑M1/140‑26 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacgg > 1:3171513‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacgg > 1:5069851‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacgg > 2:5206661‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacac > 1:675493‑M1/1‑111 (MQ=255) ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGGCAATCAGACCTCCGCCCATGTTgcccaccacaccaaaaagatacattacgg > 1:1496855‑M1/1‑111 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggt < 2:3758122‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggt < 1:4490396‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggt < 2:2576859‑M1/140‑31 (MQ=255) gTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggt < 2:2031436‑M1/140‑31 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtc > 1:1771750‑M1/1‑109 (MQ=255) tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtc > 1:1744699‑M1/1‑109 (MQ=255) aaaGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcg < 2:463772‑M1/140‑33 (MQ=255) caACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattg < 1:4082476‑M1/140‑39 (MQ=255) aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattga > 1:2288697‑M1/1‑101 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag > 1:528931‑M1/1‑100 (MQ=255) aCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgag > 1:2751518‑M1/1‑100 (MQ=255) cccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgaca < 1:2623651‑M1/134‑36 (MQ=255) ccAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggc < 1:142291‑M1/140‑43 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:4358488‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:2330617‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 2:4413790‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcc > 1:5077620‑M1/1‑94 (MQ=255) tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcc < 2:3862198‑M1/97‑4 (MQ=255) ggCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgcca < 2:4858414‑M1/140‑48 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:4793406‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1591518‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 2:1449868‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:1148611‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:3261063‑M1/140‑50 (MQ=255) cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagc < 1:2033719‑M1/140‑50 (MQ=255) gATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagca < 2:820483‑M1/140‑51 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 2:3087312‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:4758816‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:2410216‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcac > 1:2360055‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggt < 2:223126‑M1/119‑31 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggt > 1:223126‑M1/1‑89 (MQ=255) aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacgctcgacattgaggccgccagcac > 1:3342239‑M1/1‑89 (MQ=255) tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc < 2:2463567‑M1/140‑55 (MQ=255) tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagagacattacggtcgacattgaggccgccagcacggcgtgt < 1:3870065‑M1/140‑59 (MQ=255) cAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta < 2:3013499‑M1/140‑60 (MQ=255) gCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtacc > 1:4457640‑M1/1‑79 (MQ=255) tcatATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 1:3880546‑M1/140‑65 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 1:100066‑M1/1‑73 (MQ=255) tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaac > 2:1059922‑M1/1‑73 (MQ=255) gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgca < 2:2336977‑M1/132‑65 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccccaccaaagagatacattccggtcgacattgaggccgccagcacggcgtgtaccgcaaaccgcacc > 1:1307011‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcccggcgtgtaccgcaaacagcaac > 1:2691014‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaac > 2:885101‑M1/1‑67 (MQ=255) cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag > 1:1681254‑M1/1‑67 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagatatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaaccgcaacg < 2:1116081‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 1:1660220‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg < 2:3548903‑M1/140‑75 (MQ=255) gTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAAACAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg > 2:1650450‑M1/1‑66 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 2:3990429‑M1/1‑65 (MQ=255) tGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacgg > 1:3606988‑M1/1‑65 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 1:4418380‑M1/140‑78 (MQ=255) gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGACCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtg < 1:1625875‑M1/140‑78 (MQ=255) aaCATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa < 1:3393748‑M1/140‑85 (MQ=255) tCGGGCTCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 2:1982195‑M1/140‑89 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg > 2:1713409‑M1/1‑52 (MQ=255) tCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacagg < 1:2650023‑M1/140‑89 (MQ=255) ggATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag > 1:4650276‑M1/1‑49 (MQ=255) cAGTTTTGCGGTAAAACCTAGTCAATCCGACCTCCGCCCATGTTgcccaccacaccacagagatacattacggtcgacattgaggccgccagcacggcgggtaccgcaaacagcaacggtgaaatgaacaggaaggtaaa > 2:4954856‑M1/1‑44 (MQ=255) tGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag < 1:4111482‑M1/140‑103 (MQ=255) cGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcg > 2:176836‑M1/1‑36 (MQ=255) aGTCAATCAGACCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaatt > 2:4239654‑M1/1‑25 (MQ=255) aCCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 2:3350170‑M1/140‑126 (MQ=255) aCCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 2:2288697‑M1/140‑126 (MQ=255) aCCTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagca < 1:3800468‑M1/140‑126 (MQ=255) ccTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcat < 2:368517‑M1/140‑127 (MQ=255) cTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:4327833‑M1/140‑128 (MQ=255) cTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 2:693422‑M1/140‑128 (MQ=255) cTCCGCCCATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatg < 1:921157‑M1/140‑128 (MQ=255) cgcccatgTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatggcg > 1:3991282‑M1/4‑10 (MQ=255) cgcccatgTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatggcg > 2:1913046‑M1/4‑10 (MQ=255) cgcccatgTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatggcg > 1:4878319‑M1/4‑10 (MQ=255) cgcccatgTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatggca > 1:4580754‑M1/4‑10 (MQ=255) ccATGTTgcccaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatggcggtt < 1:847510‑M1/140‑134 (MQ=255) | AGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGTTAAG > NZ_CP025268/3864306‑3864577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |