| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP025268 | 262,011 | Δ34,307 bp | ykfI–intF | 46 genes ykfI, yafW, ykfH, ykfG, yafX, ykfF, CXP41_RS01315, CXP41_RS01320, CXP41_RS01325, CXP41_RS01330, yafZ, ykfA, perR, CXP41_RS01355, CXP41_RS01360, CXP41_RS01365, ykfC, CXP41_RS01385, mmuP, mmuM, fbpC, CXP41_RS01405, CXP41_RS01410, CXP41_RS01410, CXP41_RS01420, CXP41_RS01425, yagB, CXP41_RS24560, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, CXP41_RS01470, CXP41_RS01480, CXP41_RS01480, CXP41_RS01490, yagK, yagL, CXP41_RS01505, ykgV, CXP41_RS01515, intF |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP025268 | 262011 | 296317 | 34307 | 317 [0] | [4] 321 | ykfI–intF | ykfI,yafW,ykfH,ykfG,yafX,ykfF,CXP41_RS01315,CXP41_RS01320,CXP41_RS01325,CXP41_RS01330,yafZ,ykfA,perR,CXP41_RS01355,CXP41_RS01360,CXP41_RS01365,ykfC,CXP41_RS01385,mmuP,mmuM,fbpC,CXP41_RS01405,CXP41_RS01410,CXP41_RS01410,CXP41_RS01420,CXP41_RS01425,yagB,CXP41_RS24560,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,CXP41_RS01470,CXP41_RS01480,CXP41_RS01480,CXP41_RS01490,yagK,yagL,CXP41_RS01505,ykgV,CXP41_RS01515,intF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP025268 | = 262010 | 0 (0.000) | 167 (0.990) | 53/154 | 0.2 | 99.7% | intergenic (+11/+371) | CXP41_RS01280/ykfI | tRNA‑Thr/type IV toxin‑antitoxin system toxin YkfI |
| ? | NZ_CP025268 | 296318 = | 1 (0.010) | intergenic (‑170/+115) | intF/CXP41_RS01530 | integrase family protein/LysR substrate‑binding domain‑containing protein | |||||
Only 100 of 317 total aligned reads displayed.
TTAGTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATC > NZ_CP025268/261871‑262147 | ttAGTTTTAGCCTTGCCCACCGTGATTCACGTTCGTGAACATGGCCTTGCAGGGGCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGGAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAACCAAA < 1:646804‑M1/140‑1 (MQ=255) gTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgag < 1:5050025‑M1/140‑4 (MQ=255) ttttAACCTTGTCGACCGTTATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCACATTCATAATGCGAAGGTCGTAGGTTCGCCTCCTATTATCGGCACCATTACAATCAAAgagt < 2:4491325‑M1/140‑5 (MQ=255) tttAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagtt < 2:3774631‑M1/140‑6 (MQ=255) aCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc < 1:2584855‑M1/140‑10 (MQ=255) aCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc < 1:4854394‑M1/140‑10 (MQ=255) aCCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc > 2:4236749‑M1/1‑131 (MQ=255) cTTGTCCACCGTGATTCACGTTCTTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACACCTATTAGCGGCACCATTAAAATCAAAgagttacccca < 1:2322133‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCTTAGGTTCGACTCCTATTATCTGCACCATTAAAACCCAAgagttacccca < 2:3320741‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 2:2106595‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 2:2659533‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:2475954‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:1135072‑M1/140‑12 (MQ=255) cTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttacccca < 1:491656‑M1/140‑12 (MQ=255) tGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATCGTTCAGTTGGTAGAGCCGCGCATTCGTAATGCGAAGGTCGTAGGTTGGCCTCCTCGTATCGGCACGATTAAAATCAAAgagtgcccccata < 2:4682427‑M1/140‑14 (MQ=255) tGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccata < 1:3839337‑M1/140‑14 (MQ=255) tGTCCACCGTGATTAACGTTCGTGAATATGTCCTTTCAGGGCCGATATAGCTCCGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccata < 2:1961684‑M1/140‑14 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 1:4426261‑M1/1‑126 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 1:1184590‑M1/1‑126 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 2:1045173‑M1/1‑126 (MQ=255) gTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGAGATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatat > 2:4360499‑M1/1‑126 (MQ=255) gTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaata < 1:172718‑M1/140‑22 (MQ=255) gTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaata < 2:126909‑M1/140‑22 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 1:801583‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 1:979994‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:5158105‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:3969707‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:3676182‑M1/140‑26 (MQ=255) ttCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacacc < 2:3179069‑M1/140‑26 (MQ=255) cACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccac < 1:3740060‑M1/140‑28 (MQ=255) gTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAACTCAAAgagttaccccatatttaaatacaccacgtt < 2:2293382‑M1/140‑31 (MQ=255) tGAACCTGTCCTTTCAGCGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAACGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctc < 2:2808771‑M1/140‑36 (MQ=255) tGAACATGTCCTTTCACGGCCGATATAGCTCAGTTGGTAGAGCAGCGCACTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAATATCAAAgagttaccccatatttaaatacaccacgtttcctc < 1:2877333‑M1/140‑36 (MQ=255) aTGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtg < 2:113597‑M1/140‑41 (MQ=255) gTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGCGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgcc > 2:3102086‑M1/1‑98 (MQ=255) gTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgcc > 2:1906658‑M1/1‑98 (MQ=255) tCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtattt > 1:4215131‑M1/1‑92 (MQ=255) cAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttg < 1:3227801‑M1/140‑50 (MQ=255) aGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgt < 2:1523804‑M1/140‑51 (MQ=255) gggCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGCCTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:4035303‑M1/140‑52 (MQ=255) gggCCGATATAGCTCAGTGGGGAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:2914720‑M1/140‑52 (MQ=255) gggCCGATATAGCTAAGTGGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:4565951‑M1/140‑52 (MQ=255) ccGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgcca > 1:3554394‑M1/1‑86 (MQ=255) cGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccat > 1:3150614‑M1/1‑85 (MQ=255) cTCAGTTGGTAGAGCAGCGCATTCGTAATGCTAAGGTCGTAGGTTCGACTCCGATTATCTGCACCATTAAAAGCAAAgaggtaccccatatttaaatacaccacgtttcctcctgtaccgtattggtaccattgtaactt > 1:1625823‑M1/1‑77 (MQ=255) cTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaacct > 2:911702‑M1/1‑77 (MQ=255) aGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttgg > 1:3719814‑M1/1‑74 (MQ=255) ttGGTAGAGCAGCGCATTCGTAATGCGAAGGGCGTAGGTGCGACTCCTAGTATCGGCACCATTAAAATCAAAgagttaccccataggtaaatacaccacgtttcctccggggccggattggtgccattgtaatcttggga > 1:565182‑M1/1‑72 (MQ=255) tGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaa < 1:3766047‑M1/140‑70 (MQ=255) gTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaatt < 1:5185861‑M1/140‑72 (MQ=255) agagCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattca < 2:4874956‑M1/140‑74 (MQ=255) agagCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccc < 2:4925312‑M1/76‑10 (MQ=255) gagCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcat < 1:1082848‑M1/140‑75 (MQ=255) gcggcgccttCGTAATGCGAAGGTCGTAGGTTCGACGGCTCTGACAGGCACCATTAAAATCAAAgggttaccccatagttaaatacaccacgtttcctcctgtgccgtagttgtcccattgtaacctgggcaattcataa > 2:774677‑M1/4‑64 (MQ=255) gcagcGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatca < 1:578606‑M1/140‑77 (MQ=255) gcagcGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatca > 1:3339765‑M1/1‑64 (MQ=255) cgcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCCGCACGATTAAAATCAAAgagttaccccatatttaactcccccacgtttcctcctgtgccgtatttgtgccactggcaccttggcaattcatcaaact > 2:4092232‑M1/1‑60 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGTTTCGACTGCTATTATCTGCACCATTAAAATCAAAgagttaccccctatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcgagata > 2:1233601‑M1/1‑59 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata > 1:2658520‑M1/1‑59 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 1:3260720‑M1/140‑82 (MQ=255) gcATTCGTAATGCGAAGGTCGTAGGTTCGACTCCGATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata > 2:3875428‑M1/1‑59 (MQ=255) gcATTCGTAATGCCAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgcgttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaata < 2:4468396‑M1/140‑82 (MQ=255) cATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatac > 1:3376212‑M1/1‑58 (MQ=255) cATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatac > 1:3894831‑M1/1‑58 (MQ=255) cATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg > 2:1378728‑M1/1‑58 (MQ=255) cATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtg < 1:1378728‑M1/109‑52 (MQ=255) gTAATGCGAAGGTCGTAGTTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatgtaaatacaccacgtttcctcctgtgccgtatttgggccattgtaaccttggcaattcatcaaaatactgttc < 2:2047122‑M1/140‑88 (MQ=255) gTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttc < 1:86536‑M1/140‑88 (MQ=255) aaTGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctg < 1:4356397‑M1/140‑90 (MQ=255) aTGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctga > 2:2200945‑M1/1‑50 (MQ=255) gCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgaca < 2:370896‑M1/140‑93 (MQ=255) cGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacat < 1:3945341‑M1/140‑94 (MQ=255) aaGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatca < 2:3376212‑M1/140‑96 (MQ=255) aaGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctc < 1:2242878‑M1/80‑36 (MQ=255) aaGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagt > 2:4841899‑M1/1‑45 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAACTCGAAgagttaccccatatttaaatacaccccgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcagcaaaatactgttctgacatcagg < 1:1569300‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 2:5055585‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 1:1702783‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 1:3613599‑M1/140‑98 (MQ=255) ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcagg < 1:1904977‑M1/140‑98 (MQ=255) gTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggc > 1:4158116‑M1/1‑42 (MQ=255) cGACTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtg > 1:1415749‑M1/1‑32 (MQ=255) tctCCTATTATCGCCACCATTATAAACAAAgagttaccccatatttacctacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcacaatcctgttctgccatcaggcagtgcaggtgca < 2:1764238‑M1/139‑111 (MQ=255) aCTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgca < 2:4746562‑M1/140‑111 (MQ=255) aCTCCTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgacattgtaaccttggcaattcatcaaaatactgatctgacatcaggcagtgcaggtgca > 2:3432467‑M1/1‑30 (MQ=255) cTATTATCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagaca > 2:522116‑M1/1‑26 (MQ=255) tattatCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacat > 1:4754534‑M1/1‑25 (MQ=255) attatCGGCACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatt > 1:254024‑M1/1‑24 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 1:194398‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 1:1008520‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 2:5024009‑M1/1‑16 (MQ=255) cACCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaataatgttctgacatcaggcagtgcaggtgcagacatttaagccaa > 2:1190761‑M1/1‑16 (MQ=255) aCCATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctccagtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaat > 1:3110265‑M1/1‑15 (MQ=255) cATTAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattg > 2:2591093‑M1/1‑13 (MQ=255) tAAAATCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctg > 2:223787‑M1/1‑10 (MQ=255) aTCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaagatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgc < 1:4280520‑M1/140‑135 (MQ=255) aTCAAAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgc < 1:2790105‑M1/140‑135 (MQ=255) tCACAgagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcacttcatcaaaattctgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgcc < 2:4305100‑M1/140‑136 (MQ=255) aaagagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgccat > 1:2970274‑M1/1‑3 (MQ=255) aaagagttaccccatatttaaatacaccacgtttcctcctgtgccgtatttgtgccattgtaaccttggcaattcatcaaaatactgttctgacatcaggcagtgcaggtgcagacatttaagccaattgctgccgccat > 2:4570925‑M1/1‑3 (MQ=255) | TTAGTTTTAACCTTGTCCACCGTGATTCACGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATC > NZ_CP025268/261871‑262147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |