mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.1% | 2280.1 / inf | 1332 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 716 (0.810) | 163 (0.220) | 99/168 | 13.4 | 21.2% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 608 (0.820) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | 1207790 = | 757 (0.850) | 148 (0.200) | 97/168 | 14.2 | 19.0% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 627 (0.840) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 4542690 | 999 (1.130) | 31 (0.040) | 28/182 | 56.1 | 3.3% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 918 (1.140) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4542682 = | 982 (1.110) | 32 (0.040) | 28/182 | 56.1 | 3.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 920 (1.140) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1209618 | 745 (0.840) | 34 (0.050) | 21/170 | 58.9 | 4.6% | intergenic (‑499/‑67) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase |
| ? | NC_000913 | 2471897 = | 769 (1.020) | intergenic (‑380/+215) | yfdK/yfdM | putative tail fiber assembly protein YfdK/putative methyltransferase YfdM | |||||
| * | ? | NC_000913 | = 3214959 | 925 (1.040) | 13 (0.010) | 13/196 | 73.3 | 1.4% | intergenic (+71/+8) | rpoD/mug | RNA polymerase sigma factor RpoD/stationary phase mismatch/uracil DNA glycosylase |
| ? | NC_000913 | 4502090 = | NA (NA) | noncoding (1426/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 3214947 = | 931 (1.050) | 13 (0.010) | 11/200 | 76.5 | 1.4% | intergenic (+59/+20) | rpoD/mug | RNA polymerase sigma factor RpoD/stationary phase mismatch/uracil DNA glycosylase |
| ? | NC_000913 | = 4503515 | NA (NA) | noncoding (1/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 35261 | 914 (1.030) | 5 (0.010) | 5/192 | 82.1 | 0.57% | coding (111/591 nt) | caiE | putative transferase CaiE |
| ? | NC_000913 | = 35271 | 860 (1.010) | coding (101/591 nt) | caiE | putative transferase CaiE | |||||
| * | ? | NC_000913 | 589833 = | 867 (0.980) | 3 (0.000) | 3/188 | 84.2 | 0.36% | coding (1122/2973 nt) | nfrA | exopolysaccharide secretion system outer membrane protein NfrA |
| ? | NC_000913 | 589848 = | 825 (0.990) | coding (1107/2973 nt) | nfrA | exopolysaccharide secretion system outer membrane protein NfrA | |||||
| * | ? | NC_000913 | = 381315 | 404 (0.460) | 3 (0.000) | 3/188 | 84.2 | 1.0% | noncoding (56/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4498250 | 204 (0.240) | noncoding (70/1331 nt) | IS2 | repeat region | |||||