breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	8,977	C→T	A247V (GCA→GTA)	talB →	transaldolase B
MC JC	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]
RA	329,292	T→A	I15F (ATC→TTC)	betI ←	DNA‑binding transcriptional repressor BetI
MC JC	676,374	Δ11,477 bp	IS5‑mediated	[ybeQ]–gltI	[ybeQ], ybeR, djlB, ybeT, ybeU, djlC, hscC, rihA, gltL, gltK, gltJ, sroC, gltI
RA	803,662	C→A	L54I (CTT→ATT)	ybhJ →	putative hydratase YbhJ
JC JC	1,158,683	IS5 (+) +4 bp	coding (815‑818/1434 nt)	ptsG →	glucose‑specific PTS enzyme IIBC component
MC JC	1,299,499	Δ1,199 bp		insH21	insH21
MC JC	1,303,379	Δ11 bp	coding (481‑491/921 nt)	oppB →	murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
JC JC	1,743,496	IS5 (–) +4 bp	coding (40‑43/1374 nt)	mdtK →	multidrug efflux pump MdtK
RA	1,905,761	G→A	G25D (GGT→GAT)	mntP →	Mn(2(+)) exporter
MC JC	1,978,503	Δ776 bp		insB5–insA5	insB5, insA5
JC JC	1,995,413	IS5 (–) +4 bp	intergenic (‑54/‑239)	uvrY ← / → yecU	DNA‑binding transcriptional activator UvrY/protein YecU
MC JC	2,099,437	Δ2,312 bp	IS5‑mediated	[ugd]–wbbL	[ugd], gnd, wbbL
RA	2,173,363	Δ2 bp	intergenic (‑490/+918)	gatD ← / ← gatB	galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
JC JC	2,174,495	IS1 (+) +9 bp	coding (64‑72/285 nt)	gatB ←	galactitol‑specific PTS enzyme IIB component
RA	2,977,410	G→A	G271D (GGC→GAC)	galR →	DNA‑binding transcriptional dual regulator GalR
JC JC	3,262,850	IS5 (–) +4 bp	coding (808‑811/1209 nt)	tdcD ←	propionate kinase
RA	3,486,372	G→T	A85S (GCA→TCA)	crp →	DNA‑binding transcriptional dual regulator CRP
RA	3,560,455	+G	intergenic (+589/+167)	rtcR → / ← glpG	DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA	3,578,305	G→T	A141E (GCG→GAG)	gntR ←	DNA‑binding transcriptional repressor GntR
JC JC	3,939,153	IS2 (+) +5 bp	coding (927‑931/993 nt)	rbsR →	DNA‑binding transcriptional dual regulator RbsR
RA	4,296,381	+GC	intergenic (+587/+55)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
MC JC	4,368,009	Δ802 bp		[aspA]–[fxsA]	[aspA], [fxsA]

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1806450	1807189	740	647 [633]	[637] 649	pfkB	6‑phosphofructokinase 2
*	*	÷	NC_000913	3423672–3424234	3424618–3424238	5–947	663 [646]	[636] 654	[rrfD]–[rrlD]	[rrfD],[rrlD]
*	*	÷	NC_000913	4107499	4108546	1048	651 [646]	[644] 648	pfkA	pfkA