New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM406671 = 22207511285 (1.070)15 (0.010)
+AAGAAAAA		 12/278 27.1 1.2% intergenic (+105/‑796) ps507/ps506 hypothetical protein predicted by Glimmer/Critica/hypothetical protein predicted by Glimmer/Critica
?AM406671 2220770 = 1282 (1.060)intergenic (+124/‑777) ps507/ps506 hypothetical protein predicted by Glimmer/Critica/hypothetical protein predicted by Glimmer/Critica
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM406671/2220604‑2220751
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAGGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAAGAACAAAAAAGAAATCTACT  >  AM406671/2220770‑2220917
                                                                                                                                                    ||||||||                                                                                                                                                    
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             <  1:9827231/149‑1
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             >  2:10060915/1‑149
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             >  1:2012138/1‑149
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             >  2:10233167/1‑149
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             <  2:2555629/149‑1
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             <  2:6512555/149‑1
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             <  2:3941232/149‑1
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             <  2:6005256/149‑1
GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAA                                                                                                                                                             <  2:4250896/149‑1
         GGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGAAAAAAAAAAAA                                                                                                                                                    <  2:10341463/149‑1
             GATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGAAAAAAAAAAAAAAAA                                                                                                                                                <  2:8144025/149‑1
              ATGTTGATTATTTTTATATACCATTTTAATTAAATGATACTTCTTAGACTTCTACAAATAACATCAAAACGCTGATGACGAGGCTCGTGCGTTGCTGTATGAAATGAGATGGTTTGAGTTGGTGGGATAAAGAAAAAAAAAAAAAAAAG                                                                                                                                               <  2:980844/149‑1
               aGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTACGTTGCTGTATGAGCTATGATGGTTTGAGTTAGTGGGATAAAGAAAAAAAAAAAAAAAAGA                                                                                                                                              <  2:4120799/148‑1
                 TTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTAAAGAAAAGAAAAAAGAAg                                                                                                                                            <  2:484634/149‑2
                  TGATTATTATTATATGCCATTTTAATTAAATGATACTACTTAGACAACTACGGATAACATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGATGGTTTGAGTTGGTGGGATAAAGTAAAAAAAAGAAAAAAGAAga                                                                                                                                           <  2:8023392/149‑3
                     TTATTTTTATATGCCATTTTAATTAAATGATACTTATAAGACATAAAAGACTATAAAAAAAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGATGGTTTGAGTTGGTGGGATAAAGTAAAAAAAAAAAAAAAGAAGAAAa                                                                                                                                        <  2:4861853/149‑2
                          TTTATATGCCATTTTAATTAAATGATACAACATAGACTTCTACGGCAAACATAACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGAATAAAGTAAAAAAAAAAAAAAAGAAGAAAaaagaa                                                                                                                                   <  2:7003266/149‑7
                                                             actgaTACGGCTATCATCAGAACGCTTAGGACGAGGGTCGGGCGTTGCTGGATGAGCTGTGCTGGGTTGAGTTGGTGGGGTAAAGTAAAGAAAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATAT                                                                                                <  2:8170009/144‑1
                                                                       CTATCATCATAACGGAAATGACGAGGCTCGTGCGTTGATGTAAGAGCTGAGATGGTTTGAGTTGTTGGGGTAAAGAAAAAAAAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTACTACAAGCTATAGGAGATATTCTTTTAAGT                                                                                      <  2:6478983/149‑1
                                                                             gcatattGCTTATGACGTGGGTCGTGCGTTGCTGGAGGCTCTGGGGTTGTTTGAGCTTGTGGGGTAAAGTAAAGAAAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATA                                                                                <  2:8277801/142‑1
                                                                                     ctgATGACGAGGCTCGTGCGTTGATGTATGAGCTGTGCTGGTTTGAGTTGGTGGGGTAAAGTAAAGAAAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAGGTTTTTG                                                                        <  2:7665957/146‑1
                                                                                                GCTAGTGCAATGCTGTATGATGTGTGCTGATTTGAGTAGGTAGAGTAAAAAAAAGAGAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGGCTAATAGGTTTTTGAAAAACCAAGG                                                             <  2:5731308/149‑1
                                                                                                                             GTTTGAGGTGGTGGAGTAAAGTAAAGAAAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAGGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTGTGGATGA                                <  2:10140169/149‑1
                                                                                                                                       aaaaagaAAAGAAAAAAAAAAAAAAAAAAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAGGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAA                      <  2:4082108/142‑1
                                                                                                                                              aaaaaAAAAAAAAAAAAAAAGAAAAAACAAGTTAAAAAGTTTGTTGTATTACAAAATATAAGAAATATAATTTTAAGTCTAATAGGTTTTTGAAAAACCAAAGAGATAAAATATGAAAAATATTTTGTATGAATTAAAAAAAGAACAAA               <  2:3337346/144‑1
                                                                                                                                                agaAAAAAAAAAAAAAAAAAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAAGAAATAAACTTTTAAGTATAATAGGTTTTTGAAAAACCAAGAAAAAAAAATATGAAAAATATTTTGGATGAATTAAAAAAAAAAAAAAAA             <  2:6244638/146‑1
                                                                                                                                                agaAAAAAAAAAAAAAAAAAAAAAACCAATTAAAAAGTTTGTTATATTAAAAGATATAGGAGATATACTTTTAAGTCTAATAGGATTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAAGAACAAAAA             <  2:1448652/146‑1
                                                                                                                                                    aaaAAAAAAAAAAAAAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAAATATATAAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAAGAACAAAAAAGAA         <  2:8268404/146‑1
                                                                                                                                                       AAAAAAAAAAAGAAAAAAAAAGTTAAAAAGTTTGTTGTATAACAAACAATAGGAGATATTCTTTTAAGTATAATAGGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTGTGGATGAATTAAAAAAAAAAAAAAAAAGAAATC      <  2:6977343/149‑1
                                                                                                                                                        AAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAGGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAAGAACAAAAAAGAAATCT     <  2:5649434/149‑1
                                                                                                                                                        AAAAAAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTAAAACAAGAAAAAGGAGATATTCTTTTAAGTCTAATAAGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTGTGGATGAATTAAAAAAAGAACAAAAAAGAAATCT     <  2:4872810/149‑1
                                                                                                                                                          AAAAAAAAAAAAAAACCAGTTAAAAAGTTTGTAGAATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAGGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAAGAACAAAAAAGAAATCTAC   <  2:7815678/149‑1
                                                                                                                                                           AAAAAAAAAAAAAACCAGTTAAAAAGTTTGTTGTATTTCAAGCTATAGGAGATATTCTTTTAAGCCTAATAGGTTTCTGAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAAGAACAAAAAAGAAATCTACT  <  2:5826747/149‑1
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GATTAATAAGGTCGATGTTGATTATTTTTATATGCCATTTTAATTAAATGATACTTCTTAGACTTCTACGGCTATCATCACAACGCTTATGACGAGGCTCGTGCGTTGCTGTATGAGCTGTGCTGGTTTGAGTTGGTGGGATAAAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM406671/2220604‑2220751
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGAAAAAACCAGTTAAAAAGTTTGTTGTATTACAAGCTATAGGAGATATTCTTTTAAGTCTAATAGGTTTTTGAAAAACCAAGGAGATAAAATATGAAAAATATTTTGGATGAATTAAAAAAAGAACAAAAAAGAAATCTACT  >  AM406671/2220770‑2220917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.