New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM406671	704944 =	NA (NA)	1179 (0.980)	219/296	2.1	NA	coding (127/261 nt)	llmg_0720	conserved hypothetical protein
	?	AM406671	= 796737	NA (NA)					intergenic (+88/‑293)	llmg_0823/ps333	putative transposase helper protein for IS712D/terminase small subunit

AGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGCTGCGGA  >  AM406671/704838‑705088                                                                                                           |                                                                                                                                                 agtaTTGAAAGAAACCCTCATCTCATTCTATCATTCCGAACAATCCGTCACACAGCTGTCTAAACAATACGACGTGGCCCCTGCAACAATTTATATATGGATACACCTCTTCTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGAtt                                                                                                        <  2:5207192/146‑1 (MQ=1)  caacttAAAGAAACCCTTGTCGCCTTCTATCATTCTGGTCAATCCGCCACCCAGCTGTCTAAAGAATACGACCTAGCCCCAGCAACAATTTATAAATGGATAGATCTATACTATAAATCTAATGAAAGCTACGTCTCTCAAGCTGAttt                                                                                                       <  2:3523962/145‑1 (MQ=1)         aataaaCCCTTATCGCCTTCTATCATTCTAGCCAATCCGCAACCCAGCTGTCTAAAGAAGACGACGTGCACCCTGCAACAATTCATAAATGCCTAGCCCTGTACTCTAAATGCAAAGACAGCTCCGTCTCTAAAGCAGATTTTATAGaa                                                                                                >  2:5252988/4‑149 (MQ=1)                 cctaccGCCTCCTATCATTCAGGTCAATCCGCCACCCGGCTTTCTATATAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAg                                                                                        >  2:733281/6‑149 (MQ=1)                      caccatCTATCACTCTGGTCAACCCGTCACCCAGCTGTCTACATAATACGACGTGGCCCCTACAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATAAAAGCTCCGTCTATAAACCTGATTTACCAGAATTAAAAAGACAAc                                                                                   >  2:4505964/6‑149 (MQ=1)                          ttatATCAATATGGTAAATCTCTCACCCAGCTGAATAAAGAATACGACGAGGCCCCTACAACAATTTATAAATGTATAGACCTCTACACTAAATCTAATGAAGGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGc                                                                               <  2:8133077/146‑1 (MQ=1)                               tccttCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAg                                                                          <  1:7007753/146‑1 (MQ=1)                                   tcaggTCATTCCGTCACCCAGCTGTCTAAAGAAGACGGCGTGGCCCCTGCAACAATGTATAAACGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGGTGAATTTCTAGAATTAAAAAGACAACTGGCTAAAGTTaa                                                                      <  2:5853188/146‑1 (MQ=1)                                         cactCCGTCACCCAGCTGTCTAGAGAATACGACGTCGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaaga                                                                <  2:5594102/146‑1 (MQ=0)                                             ccttCACCCAACTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAAACCTCTACTCTAAATCTAATGAAAGCTACGTCTCTAAAGCTGATTTACTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACga                                                            <  2:7135901/146‑1 (MQ=1)                                                   ccaaGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGTTTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATc                                                      <  2:5860605/146‑1 (MQ=1)                                                    ccggCTGTCGAAAGAAGACGACGTGGACCATGCAAGCATGTATGAATGGAAAGACCTCTGCGCTAAATCTAATGAAAGCTCCGTGTCTAAAGCTGGGTTTCTAGAATCAAAAAGTCAACTGGCTAAAGTTAAGGAAGAACGAGACATCt                                                     <  2:1043337/146‑1 (MQ=1)                                                     catcTGTCTAAAGAATACGACGTTGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCtt                                                    <  2:7898948/146‑1 (MQ=1)                                                        ctatcaaaaGAATACGACGTGGCCCCTACAATAATTTATAAATGGATAAACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAATCTGATTTTCTAGAATTAAAAAGACAACTAGCTAAAGTTAAGGAAGAACGAGACATCTTaaa                                                 <  2:5212870/143‑1 (MQ=1)                                                                 gagtACGACGTGGCCCCTGCAACAATTGATAAATGGATAGAGCGCTACTCTAAGTCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAGAAGACAACTGGCTAAAGTTAAGGAAGGACGAGACATCTTAAAAAAAGTAtt                                        <  2:4110607/146‑1 (MQ=1)                                                                  aaaacgacgTCGCCAGTGCAACAAATTAAAAATAGATAGACCTGTACTATAAATCTAATGAAAGCGACGTGTCTAACGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAAAGAAAAAAAAAAAAAAAAGTATTg                                       <  2:2824439/146‑1 (MQ=0)                                                                   attcgaagTGGCACCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCTTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGAAATATTAAAAAAAGTATTGa                                      <  2:2156976/146‑1 (MQ=1)                                                                       gatgTGGCCCCTGCAACAATTTATAAATGGATAGACCACTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGCTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCat                                  <  2:5860630/146‑1 (MQ=0)                                                                       gacggtgCCCCTGCAACAATTTATAAATGGATAGACCTCTACGCTAAATCTAATGAAAGCGCCGTCTCTAAAGCGGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCat                                  <  2:9584032/143‑1 (MQ=1)                                                                         cggggCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAGATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAAAAAAAAAAAAAAAAGTATTGACCatat                                <  2:9256076/146‑1 (MQ=1)                                                                         cgcggCCCCTGCAACAATTTATAAATGGATAAACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTTAGGAAGAACGAAAAAAAAAAAAAAAAGTATTGACCatat                                <  2:5842975/146‑1 (MQ=1)                                                                         cctgtcccgTGCAACAATTTATAAATGGATAGAACTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTGTCTAGAATTAAAAAGACAACAGGCTAAAGTTAAGGAAGAACGAGACATCTTAATAAAAGTATTGACCatat                                <  2:8673096/144‑1 (MQ=1)                                                                          gttgCCACTCCAACAATTTATAAATGGATACACCTCTAATCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTATCTAAAGTTAAGTAAGAACTAAACATCTTAAAAAAAGTATTGACCATAtt                               <  2:7135137/146‑1 (MQ=1)                                                                           tgtcccaTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATATTCTAGAATTAAAAAGAAAACTGGCTAAAGTTAAGGAAGAACTAGAAAAATAAAAAAAAGTATTGACCATATTc                              <  2:3480974/146‑1 (MQ=1)                                                                            ggaccatGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAAAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACAAATTAAAAAAAGTATTGACCATATTCg                             <  2:1989399/143‑1 (MQ=1)                                                                                  tgaaacaaTTTATAAATGGATAGACCTCTACTCTAAATCTAATAAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGAAAACTGGCTAAAGTTAAGGAAGAAAGAAAAAAAAAAAAAAAAGTATTGACCATATTCGCCgaga                       <  2:4616192/146‑1 (MQ=1)                                                                                  tgaaaaaaTTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTATAAAATTAAAAAGACAATTGGCTAAGGTTAATGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCgaga                       <  2:3537021/143‑1 (MQ=1)                                                                                    aaaaaaTATATAAATGGATATAACTCTAATTAAAATAAAATAAAAGATCCGACTATAAAACTGATAAACAAGAATAAAAAAGACAACTGGCTAAAGTAAAGTAAGAACGAGAAAACTTAAAAAAAGTATTGACCATATTCGCCGAGaaa                     <  2:6064239/145‑1 (MQ=0)                                                                                      acgaTTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGaaaaa                   >  2:6391735/4‑149 (MQ=1)                                                                                      acgaTTTATAAAAGGATAGACCTCTCCTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGaaaaa                   <  2:801104/146‑1 (MQ=0)                                                                                        aaattATAAATGGATAGACCTCTACTCTAAAACAAAAGAAAGCTCCGAAGCAAAAGCTTATTATCTAGAATTAAAAAGAAAAATGGCTAAAGTTAAGGAAGAATGAAAAAAAAAAAAAAAAGTATTGACCATATTCGCCGAGAAAaaga                 <  2:1629498/146‑1 (MQ=0)                                                                                         atatataAATGGATAGCCCTCTACTCTAAATCTAATGAAAGCTACGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAaagaa                <  2:10311656/146‑1 (MQ=0)                                                                                            tctagaTGGATATACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGAAATCTTAAAAAAAGTATTGGCCATATTCGCCGAGAAAAAGAagtg             <  2:5697470/144‑1 (MQ=0)                                                                                                aagggATAGACCGCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAagtgagtg         <  2:1110697/146‑1 (MQ=1)                                                                                                 atcgATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGtgc        <  2:4556653/146‑1 (MQ=1)                                                                                                   ggttAGCCCTCTACTCTAAATCTAATGAAAGATCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTACAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTGGCCGAGAAAAAGAAGTGAGggctg      >  2:4741200/4‑149 (MQ=1)                                                                                                    gacaggccTCTACTCTAAATCTGATGAAAGCGCCGGCTGTAAAGCGCGTGTGCTAGAATTAGAAAGACAACTGTCGAAAGTTACGGAAGAACGAGACATCTAAAAAAAAGTATTGACCATATTGGCCGAGAAAAAGAAGTGAGtgctgc     <  2:5753029/143‑1 (MQ=1)                                                                                                       agccctctcctctAAATCTAATGAAAGCGCCGTCTCTAAAGCGGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATCCGCCGAGAAAAAGAAGTGAGTGCTGCGGa  <  1:3698607/146‑1 (MQ=1)                                                                                                           |                                                                                                                                                 AGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGCTGCGGA  >  AM406671/704838‑705088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.