New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM406671 495877 =124 (0.110)17 (0.020)
+AAAAAAAAAAAAAAAT		 17/264 24.5 3.1% intergenic (+77/‑32) llmg_0504/nifZ putative membrane protein/pyridoxal‑phosphate dependent aminotransferase
?AM406671 = 1647943 1061 (0.960)intergenic (+48/+134) tnp905/mleR pseudogene/malolactic fermentation system transcriptional activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGTAAACTTGAAGGGTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM406671/496013‑495877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGC  <  AM406671/1647943‑1647882
                                                                                                                                         ||||||||||||||||                                                              
ATGTAAACTTGAAGGGTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAAACATTAGATTAACTGCCGTAGTAGCAGAATTATCAAAATATATCATTTTTTATACTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAA                                                                    <  2:9379779/149‑1
 aGTAAACTTGAAGTGTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAAACATTGGATTAACTGCCGTCGTAGCAAAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATAAAAAAAAAAAA                                                                   <  2:3178840/148‑1
  GTAAACTTGAAGGGTTTCCCATAATTTTTGTTGCTACATCTATATAAGTTCGTAAAAAAATTAAATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAAAA                                                                  <  2:2521752/149‑1
      ACTTGAAGGGTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTAGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATACTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAAAAATGA                                                              <  2:5492168/149‑1
        TTGAAGGGTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAAAAATGATA                                                            <  2:7285141/149‑1
           AAGGGTTTCCCATAATTTTTGTTGCTACATATGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAATAAAAAAAAAAATGATACTG                                                         <  2:4034367/149‑1
                 TTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAAAAATGATACTGTCAATA                                                   <  2:6851422/149‑1
                   CCCATAATTTTTGTTGCTACATATGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTAAATAAAAAAAAATGATACTGTCAATAAT                                                 <  2:1092321/149‑1
                            TTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCATTAATATTTAAAAATCAATCTTAAATTAAAAAAAAAAATGATACTGTCAATAATTATGTGTAA                                        <  2:7985498/149‑1
                              TGTTTCTACATCTATATAAGTTCAAAAAACCATTGGATTAAATGACGTAGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAAC                                      <  2:7199668/149‑1
                                TTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACAC                                    <  2:7228006/149‑1
                                     ACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATTATAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAG                               <  2:2661997/149‑1
                                        TCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAG                            <  2:7857482/149‑1
                                           GTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAAAAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGT                         <  2:6868993/149‑1
                                              TAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAAAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATTTTAAAAAAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGA                      <  2:6186595/149‑1
                                                 GTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAAATAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGA                   <  2:4933201/149‑1
                                                   TCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTAAATAAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAAT                 <  2:6296040/149‑1
                                                            CATTAGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATAATAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAA        <  2:7632524/149‑1
                                                                GGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTATAAAAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAA    <  2:6632296/149‑1
                                                                  ATTAACTGCCGGCGTAGCAGAATTATCAAAATATATCATTTTTTATCATTAATATTTAAAAATCAATCTTATTAAAAAAAAAAAAATGATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGC  <  2:5430119/149‑1
                                                                                                                                         ||||||||||||||||                                                              
ATGTAAACTTGAAGGGTTTCCCATAATTTTTGTTGCTACATCTGTATAAGTTCGTAAAACCATTGGATTAACTGCCGTCGTAGCAGAATTATCAAAATATATCATTTTTTATCCTTAATATTTAAAAATCAATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM406671/496013‑495877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATACTGTCAATAATTATGTGTAAACACTCAAGTAGAGTTGAAGAATATTAATCAAATAAGC  <  AM406671/1647943‑1647882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.