| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM406671 | 704944 = | NA (NA) | 1012 (0.910) | 209/296 | 2.6 | NA | coding (127/261 nt) | llmg_0720 | conserved hypothetical protein |
| ? | AM406671 | = 796737 | NA (NA) | intergenic (+88/‑293) | llmg_0823/ps333 | putative transposase helper protein for IS712D/terminase small subunit | |||||
GCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGC > AM406671/704820‑705082 | gccaaaaCGCGACTCAAAAGAATTTAACGACACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGGCTAAAGCATACGACGCAGCCCCTGCAACCATTTATAAATCGTTAGCCCTCTACTCTAAATCTACTGAAAGCt < 2:8162210/146‑1 (MQ=1) cataaaCGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTCTAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTc < 2:5375970/146‑1 (MQ=1) tattCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTaa < 2:1776975/146‑1 (MQ=1) cactCCGTCAGCTAGCTGTCTAAAGAATACGACGTGGCCCGTGCAACAAGTTATAAATGGATAGACATCTACCCTCAATCTAATGGAAGCTCCGTCACTAAAGCTGATATTCCAGAATTAAAAAGACAAATGGCCAAAGTTAAGgaagg > 2:2304722/4‑148 (MQ=1) cactCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTCACGgaaga > 1:8919370/4‑149 (MQ=0) cactCCGTCACCCAGCTGTCTAAAGAATACGACCTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCGAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGgaaga < 2:856459/146‑1 (MQ=0) atgcGTCCCCCAGATGTCTAAAGAATACGACGTGGCCCCTGCAACAATATATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGAGGTTCTAGAATTAAAAAGACAACTGGCTAATGTTAAGGAAGAAc > 2:7209152/4‑149 (MQ=1) gtaaCCGAGCTGGCTAAAGAATAAGACGAGGCCCCTGAAACAATTTATAAATGGATAGACCGCCACTCTAAATCAAATGAAAGCTCCGTCTCTAAAGCTGAAAAAAAAAAAAAAAAAAGACAACTGGCTAAAGTTAAGGAAGAACgaga < 2:1129725/146‑1 (MQ=1) acacAGCTTACTAAATAATACGACGTCGCCCCTGCAACAATTTATAATAGGATAGACCTCTACACTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACAt < 2:9102889/146‑1 (MQ=1) agacattgCCCCTGAAACAATTTATAAAAGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACAGGCTAAAGTTAATGAAGAACGAAAAAACATAAAAAAAGTATTGACCa < 2:1011547/142‑1 (MQ=1) agaagTGGCCACTGCAACAATTTATAAATGGATAAACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACAAGAAATATTAAAAAAAGTATTGACCa < 2:7185634/145‑1 (MQ=1) cgtagacccTGCAACAATTTAAAAATGAATAGAACACTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAAAAAAAAAAAAAAAAGTATTGACCatat < 2:1359161/143‑1 (MQ=1) gtgtcgccTTCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTGTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAATAACGAGACATCTTAAAAAAAGTATTGACCATAtt < 2:8827938/143‑1 (MQ=1) ccacTGCAACAATTTATAAATGGATAGACCTCTGCTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGAAAGAACGAGACATATTAAAAAAAGTATTGACCATATTCGcc < 2:8095426/146‑1 (MQ=0) catcaaTTTTTAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGGTGATTTTGTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATGTTAAAAAAAGTATGGACCATATTCGGCgagaca > 2:554252/4‑147 (MQ=1) aaaattATAAATGGATAGACCTCTACTCTAAATAAAATGAAAGATCCGAATCAAAAACTGATTTTCTAGAATAAAAAAGACAATTGGCTAAAGCTAAGGCAGAACGAAAAAAAAAAAAAAAAGTATTGACCATATTCGCCGAGAAAaag < 2:6781709/145‑1 (MQ=1) atctataAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAaagaa < 2:5558014/146‑1 (MQ=1) tataaaaaTGGATAGACCACTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCAGAAATTCAAGAATTAAAAAGACAACTGGCGAAAGTTAAAGAAGAACGAGACATCTAAAAAAAAATATTGACCATATTCGCCGAGAAAaagaag > 2:3905907/6‑149 (MQ=1) taaaaaTGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAagtg < 2:532533/146‑1 (MQ=1) aagtGGATAGACCTCTACTCTACACCTAATGAAAGCTCCGTCTCTAAAGCTGCTTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAAAAAAAGaagtaagt > 2:544147/4‑149 (MQ=1) aaatttatatACCTCTACACTAAATCTTATTAATGCTCCCTCTCTAATGCTGATTTTCTAAAAATAAAAACACAACTGGCTAAAGTTAATCAAGAACAAAAAAAAATGAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAagtgagt < 2:6465939/143‑1 (MQ=0) attgATAGACCTCTACTCTAAAACTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTAGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGtgc < 2:6335991/146‑1 (MQ=0) | GCAAAAACGCTACTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGC > AM406671/704820‑705082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |