New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM406671	704944 =	NA (NA)	1077 (1.010)	211/296	3.9	NA	coding (127/261 nt)	llmg_0720	conserved hypothetical protein
	?	AM406671	= 796737	NA (NA)					intergenic (+88/‑293)	llmg_0823/ps333	putative transposase helper protein for IS712D/terminase small subunit
Rejected: Coverage evenness skew score above cutoff.

CTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGC  >  AM406671/704832‑705082                                                                                                                 |                                                                                                                                           ctgaaaaGAATTTAAAGAGACCCTTATCACCTTCTAGCAGTCTTGTCAAACCGTCAACCATCTGTCTAAAGAATACGACGTGGACACTGCAAGAATTTATAAATTGATAGACCTCTACTCGATATCTCATGAAAGCTCCGTCTCTAAAg                                                                                                        <  2:6047216/146‑1 (MQ=1)  tcgaaaGAATTTAAAGAAACCCTTATCGCCTTCTAACATTCTGGTCAATCGGTCACCCATCTGTCTAAAGAATACCCCCTGTCCCGTGCAATAATTTATTAATGGATAGACCTCTACTCTAAAGCTAATGAAAGCTCCGTCTCTAAAGc                                                                                                       <  2:5037872/146‑1 (MQ=1)             tacaGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAg                                                                                            <  1:6154353/146‑1 (MQ=1)                                   tagcATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAGTCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTaa                                                                      <  1:4234130/146‑1 (MQ=1)                                          cttgTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAg                                                               <  2:2514776/146‑1 (MQ=1)                                                     tccagccAGCTGTGTAAAGAATACGACGTGGCCCCTGCAACAATTTATAGATGGAGAGGCCTCTACTCTAAATCTAATGAAAGCTCCGGCTCTAAAGCTGATTTTCTAAAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACgaga                                                    <  2:4349232/144‑1 (MQ=1)                                                                gacgaacgAATACGACGTCGCCCCTGCAACAATTTATAAATCGATAGACCTCTACTCTAAATCGAATGAAAGCTCCGTCTATAAAGCCGAGCTTCTAGAATTAAAAACACAACTGGCTAAAGTTAAGCAAAAACGAGACACATTaaaaa                                         >  2:1265376/8‑149 (MQ=1)                                                                 tcgaaaTAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAATGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTaaaaaa                                        <  2:5779598/146‑1 (MQ=0)                                                                               cgaggCGCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAGATCTAATGAAAGCTCCGTATCTAAAGCTGATTTTCTAGGATTAAAAAGACAACTAGCTAAAGATAAGAAAGAACGAGACATCTTCAAAAAAATATTGACCataa                          >  2:4479938/4‑148 (MQ=1)                                                                                       cttaaataaTTTATAAATGTATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCgag                  <  2:8505616/142‑1 (MQ=0)                                                                                                  taaaaaTGGATAGACCGCTAATCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGAATTTCAAGAATAAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGAAATCTAAAAAAAAGTATTGACCAAATTCGCCGAGAAAAAGAagtg       <  2:1961946/146‑1 (MQ=1)                                                                                                     aactGGATAGACATCTACACTAAATCTAATGAAAGCTCCGTCACTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGAAAGAACGAAAAAAAATAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAagtgagt    <  2:896091/146‑1 (MQ=1)                                                                                                       atagATAAACCTCTACTCTAAATCTAATGAAAGCTCCGACTATAAAGCTTATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAAGAAGAACGAAACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGtgc  <  2:7242654/146‑1 (MQ=1)                                                                                                                 |                                                                                                                                           CTCAAAAGAATTTAAAGAAACCCTTATCGCCTTCTATCATTCTGGTCAATCCGTCACCCAGCTGTCTAAAGAATACGACGTGGCCCCTGCAACAATTTATAAATGGATAGACCTCTACTCTAAATCTAATGAAAGCTCCGTCTCTAAAGCTGATTTTCTAGAATTAAAAAGACAACTGGCTAAAGTTAAGGAAGAACGAGACATCTTAAAAAAAGTATTGACCATATTCGCCGAGAAAAAGAAGTGAGTGC  >  AM406671/704832‑705082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.