| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893576–3894994 | 3901930 | 6937–8355 | 90 [86] | [0] 164 | insJ‑5–[yieO] | insJ‑5,insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 143 (0.910) | 61/68 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
Only 100 of 205 total aligned reads displayed.
CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652496‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:8158239/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:6140247/37‑1CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 1:5904061/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 1:8905380/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 1:9127946/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:10442251/37‑1CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 1:273824/37‑1CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 1:2228348/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:4638653/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:5337642/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:9920884/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 1:10307481/1‑37CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC < 2:7454472/37‑1CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTAC > 2:6882018/1‑37 CTCGTNTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 2:10700080/1‑37 CTCGTGTTTAACTGTCCAACTTTTTGTGGTCAGTACA < 2:10965774/37‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:6577054/1‑37 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 2:3896976/1‑37 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:7489064/1‑37 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:4899584/37‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:7715198/1‑37 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:9663240/1‑37 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:9860043/1‑37 TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG > 1:1440497/1‑37 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 2:6031577/37‑1 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGG < 2:1709634/37‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 2:2840114/37‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 2:6339795/37‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 2:4307689/1‑37 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:6397910/1‑37 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 2:4526616/37‑1 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 2:6415628/1‑37 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 2:7881352/37‑1 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 2:8741846/1‑37 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 1:10011583/1‑37 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 1:3690421/1‑37 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT < 1:10598410/37‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTG < 1:7109835/37‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTG > 1:419709/1‑37 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTG < 1:8139203/37‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGC > 1:5623364/1‑37 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCC < 2:9344795/37‑1 TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC > 2:7353853/1‑37 TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCC < 2:5896870/37‑1 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCA > 1:10686589/1‑37 TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT < 1:4557807/37‑1 TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT < 2:4088518/37‑1 TGTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGT > 2:8959771/1‑37 GTCCAACTTTTTGGGGTCAGTCCAGGTTGCCCAGGTG < 2:10907888/37‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG > 2:4104734/1‑37 GTCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTG < 2:10032828/37‑1 TCCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGA > 2:8052147/1‑37 CCAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGAC < 1:2553430/37‑1 CAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC > 1:8406413/1‑37 CAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC < 1:1501142/37‑1 CAACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACC > 1:7265614/1‑37 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA < 2:203117/37‑1 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA > 2:2111599/1‑37 AACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCA < 2:950742/37‑1 ACTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAG < 2:7577337/37‑1 CTTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGC > 1:10964814/1‑37 TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA < 1:3633475/37‑1 TTTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCA < 1:2167123/37‑1 TTTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCAC < 2:255082/37‑1 TTTTGGGGTCAGTACAGGGTGCCCAGGTGACCAGCAC > 1:9916300/1‑37 TTTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACG > 2:7966417/1‑37 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 2:8537684/1‑37 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC < 1:128714/37‑1 TTGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGC > 1:9497417/1‑37 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC > 1:3447162/1‑37 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:8274514/37‑1 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 2:4718713/37‑1 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 2:3790194/37‑1 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC > 1:5730487/1‑37 TGGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCC < 1:10517557/37‑1 TGGGGTCAGTACAGGTTGCCCAGGGGACCAGCACGCC > 2:5443560/1‑37 GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG > 1:11188408/1‑37 GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG < 2:4996603/37‑1 GGGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCG < 1:16498/37‑1 GGGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGC > 1:3962704/1‑37 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC > 1:7678621/1‑37 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 2:9163726/37‑1 GGTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCC < 2:1577155/37‑1 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA > 1:3251618/1‑37 GTCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCA < 1:6770461/37‑1 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA > 1:8016144/1‑37 TCAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAA > 1:1987461/1‑37 CAGTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:2392514/37‑1 GTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAA > 1:7932621/1‑37 GTACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAA > 2:7007175/1‑37 GTACAGGTTGCCCAGGCGACCAGCACGCCGCCAAGAA > 1:1837987/1‑37 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:10093027/37‑1 TACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:503210/37‑1 ACAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACG > 1:9318162/1‑37 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG < 2:8406396/37‑1 CAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG > 1:4508203/1‑37 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG < 2:7548035/37‑1 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 2:3527657/1‑37 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:4339032/1‑37 AGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:1158597/1‑37 CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3652496‑3652533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > REL606/3901931‑3901966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |