| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893576–3894994 | 3901930 | 6937–8355 | 90 [86] | [0] 164 | insJ‑5–[yieO] | insJ‑5,insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3652533 | NA (NA) | 143 (0.910) | 61/68 | 0.1 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
AATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA > REL606/3893539‑3893588 | aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTgg < 2:7438997/37‑1 (MQ=255)aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTgg > 2:9714555/1‑37 (MQ=255)aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTgg < 2:4869546/37‑1 (MQ=255)aaTCTAACGCCAGACTGTACTGCACCCATTTTGTTgg < 1:5530052/37‑1 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGa < 1:11137767/37‑1 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGa > 1:9374262/1‑37 (MQ=255) aTCTAACGCCAGACTGTACTGCACCCATTTTGTTGGa < 1:3060262/37‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc < 2:4734380/37‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc < 1:4812661/37‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc < 1:4044672/37‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc < 1:2964714/37‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc < 1:2751620/37‑1 (MQ=255) tCTAACGCCAGACTGTACTGCACCCATTTTGTTGGAc < 1:9946124/37‑1 (MQ=255) cTAGCGCCAGACTGTACTGCACCCATTTTGTTGGACg < 1:387182/37‑1 (MQ=255) cTAACGCCAGACTGTACTGCACCCATTTTGTTGGACg < 2:5321429/37‑1 (MQ=255) cTAACGCCAGACTGTACTGCACCCATTTTGTTGGACg < 1:8917040/37‑1 (MQ=255) tAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa > 2:8464561/1‑37 (MQ=255) tAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa < 1:6267771/37‑1 (MQ=255) tAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa > 1:9314449/1‑37 (MQ=255) tAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa < 1:4408572/37‑1 (MQ=255) tAACGCCAGACTGTACTGCACCCATTTTGTTGGACGa < 2:6085496/37‑1 (MQ=255) aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGAt > 1:4395544/1‑37 (MQ=255) aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGAt < 1:5140488/37‑1 (MQ=255) aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGAt < 1:5053603/37‑1 (MQ=255) aaCGCCAGACTGTACTGCACCCATTTTGTTGGACGAt > 1:8324159/1‑37 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 2:7293610/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 2:5365354/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 1:9422407/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 2:10142032/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 1:10000459/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg > 2:7477329/1‑37 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 2:7491776/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 1:4178571/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 1:3937052/37‑1 (MQ=255) aCGCCAGACTGTACTGCACCCATTTTGTTGGACGATg < 2:8925098/37‑1 (MQ=255) cGCCAGACTGTCCTGCCCCCATTTTGTTGGGCGATGa < 2:9700519/37‑1 (MQ=17) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa < 2:10119276/37‑1 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa < 1:9834020/37‑1 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa > 2:1980739/1‑37 (MQ=255) cGCCAGACTGTACTGCACCCATTTTGTTGGACGATGa < 2:5114037/37‑1 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 2:8481003/37‑1 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 2:4996880/37‑1 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:2212773/1‑37 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa > 2:8633867/1‑37 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:915736/1‑37 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 2:5811123/37‑1 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa < 2:6631098/37‑1 (MQ=255) gCCAGACTGTACTGCACCCATTTTGTTGGACGATGaa > 1:5617019/1‑37 (MQ=255) ccAGACTGTACTGCACCCATTTTGTTGGACGATGaaa < 2:7336563/37‑1 (MQ=255) ccAGACTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:1504450/37‑1 (MQ=255) ccAGACTGTACTGCACCCATTTTGTTGGACGATGaaa < 2:5098979/37‑1 (MQ=255) ccAGACTGTACTGCACCCATTTTGTTGGACGATGaaa < 1:4034272/37‑1 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 2:9545431/1‑37 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:10449045/37‑1 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 2:7546629/37‑1 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 2:4014470/1‑37 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 2:2834689/1‑37 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:9559645/37‑1 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:3836181/37‑1 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:6216194/1‑37 (MQ=255) cAGACTGTACTGCACCCATTTTGTTGGACGATGAAAt > 1:629312/1‑37 (MQ=255) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 2:3656482/37‑1 (MQ=40) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg > 1:138023/1‑37 (MQ=40) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg > 1:1821199/1‑37 (MQ=40) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 2:4870150/37‑1 (MQ=40) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:2501072/37‑1 (MQ=40) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 1:9364845/37‑1 (MQ=40) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg < 2:8923852/37‑1 (MQ=40) aGACTGTACTGCACCCATTTTGTTGGACGATGAAATg > 1:3784728/1‑37 (MQ=40) gACTGTACTGCACCCATTTTGTTGGACGGTGAAATgg < 2:3836947/37‑1 (MQ=255) gACTGTACTGCACCCATTTTGTTGGACGATGACATgg > 1:4803996/1‑37 (MQ=255) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:6282208/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:6439825/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:5540209/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:4968432/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:1754095/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 2:8318730/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:6919361/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:2826144/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:9137010/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 1:9794889/1‑37 (MQ=37) gACTGTACTGCACCCATTTTGTTGGACGATGAAATgg > 2:8962710/1‑37 (MQ=37) gACTGNACTGCACCCATTTTGTTGGACGATGAAATgg > 2:10697543/1‑37 (MQ=37) aCTGTACTGCACCCATTTTGTTGGACGATGAAATGGa < 2:9828713/37‑1 (MQ=33) aCTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 2:6129480/1‑37 (MQ=33) aCTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 2:10231262/1‑37 (MQ=33) aCTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 1:7566818/1‑37 (MQ=33) aCTGTACTGCACCCATTTTGTTGGACGATGAAATGGa < 2:7905771/37‑1 (MQ=33) aCTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 1:4836595/1‑37 (MQ=33) aCTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 2:7023018/1‑37 (MQ=33) | AATCTAACGCCAGACTGTACTGCACCCATTTTGTTGGACGATGAAATGGA > REL606/3893539‑3893588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |