| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3741540 = | NA (NA) | 409 (2.440) | 15/72 | 14.2 | 67.5% | noncoding (426/768 nt) | IS1 | repeat region |
| ? | REL606 | = 3849861 | 197 (1.180) | coding (771/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 409 total aligned reads displayed.
GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3741575‑3741540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTTCGCGGGTGATC < REL606/3849861‑3849846 GGCTATGTCGGGGCTAAATCGCGCCCGCGCTGGCTGG > 1:3427035/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 1:21951/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 1:5041880/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 1:5258908/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 2:10878461/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 2:4329422/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 2:5652214/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 2:5868140/1‑37GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGG > 1:10117229/1‑37 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGGTGGt > 1:1000768/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 2:10079650/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 2:8595654/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 2:6523077/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 2:2761913/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 2:4205477/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 1:11064916/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 2:608858/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGt > 2:6887188/1‑36 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGG > 1:4872409/1‑37 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGG > 1:6470673/1‑37 GCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGG > 1:234843/1‑37 CTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGg > 1:8874943/1‑36 CTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGT > 1:9425254/1‑37 CTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGT > 1:10607605/1‑37 CTATGTCGGGGCTAAATCGCGCCAGCGCCGGCTGGGT > 1:5601572/1‑37 CTATGTCGGGGCTAAATCGAGCCAGCGCTGGCTGGGg > 1:3949040/1‑36 TATGTCGGGGCTAAATCGCGCCCGCGCTGGCTGGGTT > 1:1161307/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 2:7646898/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 2:3948698/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 2:3214047/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 2:8885907/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 1:4400409/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 2:7023737/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 2:2083155/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 1:7442737/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTT > 2:1332446/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTT > 1:7166528/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTT > 1:8473598/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTT > 1:9920081/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTT > 1:6706350/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTT > 1:4627753/1‑37 TATGTCGGGGCTAAATCGCGCCAGCGCTGGATGGTTT > 2:9332151/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTT > 2:10445766/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTT > 1:2910053/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTT > 2:4816054/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTT > 1:9628522/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTT > 2:7815687/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTT > 1:7077440/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTT > 1:8042751/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTT > 1:4560535/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTT > 1:10867090/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTT > 1:8779410/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTT > 1:3520598/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTT > 1:8289079/1‑37 ATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTT > 1:4267286/1‑37 TGTCGGGGCTAAATCGCGCCCGCGCTGGCTGGGTTTC > 1:8926374/1‑37 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTt > 1:7393388/1‑36 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTt > 2:1752018/1‑36 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTt > 1:10477664/1‑36 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTt > 1:4065210/1‑36 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTt > 1:3363881/1‑36 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTt > 1:10674590/1‑36 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTt > 1:8631359/1‑36 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTC > 1:1816935/1‑37 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTC > 1:2095123/1‑37 TGTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTC > 1:1344841/1‑37 GTCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCc > 1:6217632/1‑36 GTCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTCc > 1:6872527/1‑36 TCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTTGC > 2:6750356/1‑37 TCGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCGC > 2:3593716/1‑37 TCGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTGCGC > 1:2813278/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGTGTTGCGCG > 2:5313037/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTTGCG > 1:1607856/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCTCG > 1:252961/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCGCG > 2:7381850/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCGCG > 2:4609529/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCGCG > 1:3780662/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTTGCG > 1:982891/1‑37 CGGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTTGCG > 1:7902255/1‑37 GGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTTGCGt > 1:1686145/1‑36 GGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCTCGG > 1:10367709/1‑37 GGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCGCGG > 1:3079380/1‑37 GGGGCTAAATCGCGCCAGCGCTGGCTGGTTTTCGCGG > 1:5409135/1‑37 GGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTTGCGt > 1:10836678/1‑36 GGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTCGCGt > 1:1419846/1‑36 GGGGCTAAATCGCGCCAGCGCTGGCTGGGTTTCGCGt > 1:1893576/1‑36 GGGCTAAATCGCGCCAGCGCTGGCTGGTTTTTGCGGc > 1:11111861/1‑36 GGGCTAAATCGCGCCAGCGCTGGCTGGGTTTTGCGGt > 1:5774060/1‑36 GGGCTAAATCGCGCCAGCGCTGGCTGGGTTTCTCGGc > 1:9229188/1‑36 GGCTAAATCGCGCCAGCGCTGGCTGGTTTTTGCGTGT > 1:49529/1‑37 GGCTAAATCGCGCCAGCGCTGGCTGGGTTTCTCGGGT > 1:6315301/1‑37 GCTAAATCGCGCCAGCGCTGGCTGGTTTTCGCGGATG > 1:3230177/1‑37 GCTAAATCGCGCCAGCGCTGGCTGGGTTTCGCGGGTt > 1:3718462/1‑36 CTAAATCGCGCCAGCGCTGGCTGGTTTTTGCGGCTGt > 1:764362/1‑36 CTAAATCGCGCCAGCGCTGGCTGGGTTTCTCGGATGg > 1:6599315/1‑36 CTAAATCGCGCCAGCGCTGGCTGGGTTGCGCGTGTGt > 1:1979453/1‑36 TAAATCGCGCCAGCGCTGGCTGGTTTTTGCGGTTGAc > 1:5908574/1‑36 TAAATCGCGCCAGCGCTGGCTGGTTTTTGCGGGGGAc > 1:9763045/1‑36 TAAATCGCGCCAGCGCTGGCTGGTTTTTGCGGATGAg > 1:10511176/1‑36 TAAATCGCGCCAGCGCTGGCTGGGTTTCGCGGGTGAT > 1:9304296/1‑37 GGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3741575‑3741540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTTTCGCGGGTGATC < REL606/3849861‑3849846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |