| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 3741540 = | NA (NA) | 409 (2.440) | 15/72 | 14.2 | 67.5% | noncoding (426/768 nt) | IS1 | repeat region |
| ? | REL606 | = 3849861 | 197 (1.180) | coding (771/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 203 total aligned reads displayed.
CAAAGACTGGACCATCGAGCAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAG > REL606/3849825‑3849897 | cAAAGACTGGACCATCGAGCAGATCACCCGCGAAAcc > 1:2423176/1‑37 (MQ=255)cAAAGACTGGACCATCGAGCAGATCACCCGCGAAAcc > 2:10520032/1‑37 (MQ=255)cAAAGACTGGACCATCGAGCAGATCACCCGCGAAAcc > 2:3292949/1‑37 (MQ=255) aaaGACTGGACCATCGAGCAGATCACCCGCGAAACCt < 2:9285230/37‑1 (MQ=255) aaaGACTGGACCATCGAGCAGATCACCCGCGAAACCt > 1:4399796/1‑37 (MQ=255) aaGACTGGACCATCGAGCAGATCACCCGCGAAACCTa > 1:6596999/1‑37 (MQ=255) aaGACTGGACCATCGAGCAGATCACCCGCGAAACCTa < 2:1441170/37‑1 (MQ=255) aaGACTGGACCATCGAGCAGATCACCCGCGAAACCTa < 2:8144583/37‑1 (MQ=255) aaGACTGGACCATCGAGCAGATCACCCGCGAAACCTa > 1:6409815/1‑37 (MQ=255) gACTGGACCATCGAGCAGATCACCCGCGAAACCTACa < 2:6889317/37‑1 (MQ=255) gACTGGACCATCGAGCAGATCACCCGCGAAACCTACa < 2:1325433/37‑1 (MQ=255) aCTGGACCATCGAGCAGATCACCCGCGAAACCTACaa > 1:5738071/1‑37 (MQ=255) cTGGACCATCGAGCAGATCACCCGCGAAACCTCCaaa < 1:7715454/37‑1 (MQ=255) tGGACCATCGAGCAGATCACCCGCGAAACCTACAAat < 1:1663781/37‑1 (MQ=255) tGGACCATCGAGCAGATCACCCGCGAAACCTACAAat < 1:6294265/37‑1 (MQ=255) ggACCATCGAGCAGATCACCCGCGAAACCTACAAata > 2:10008012/1‑37 (MQ=255) ggACCATCGAGCAGATCACCCGCGAAACCTACAAata > 1:10020064/1‑37 (MQ=255) gACCATCGAGCAGATCACCCGCGAAACCTACAAatat < 2:12244/37‑1 (MQ=255) gACCATCGAGCAGACCGCCCGCGAAACCTACAAatat < 1:5316579/37‑1 (MQ=38) aCCATCGAGCAGATCACCCGCGAAACCTACAAATATg < 2:6156841/37‑1 (MQ=255) ccATCGAGCAGATCACCCGCGAAACCTACAAATATGc < 1:5438651/37‑1 (MQ=255) ccATCGAGCAGATCACCCGCGAAACCTACAAATATGc < 1:8220026/37‑1 (MQ=255) cATCGAGCAGATCACCCGCGAAACCTACAAATATGcc > 1:680503/1‑37 (MQ=255) cATCGAGCAGATCACCCGCGAAACCTACAAATATGcc > 2:4333417/1‑37 (MQ=255) cATCGAGCAGATCACCCGCGAAACCTACAAATATGcc < 2:8490740/37‑1 (MQ=255) aTCGAGCAGATCACCCGCGAAACCTACAAATATGCCg < 2:7879703/37‑1 (MQ=255) tCGAGCAGATCACCCGCGAAACCTACAAATATGCCGa > 1:9609054/1‑37 (MQ=255) tCGAGCAGATCACCCGCGAAACCTACAAATATGCCGa > 1:3177108/1‑37 (MQ=255) tCGAGCAGATCACCCGCGAAACCTACAAATATGCCGa < 2:4914791/37‑1 (MQ=255) tCGAGCAGATCACCCGCGAAACCTACAAATATGCCGa < 1:4781435/37‑1 (MQ=255) tCGAGCAGATCACCCGCGAAACCTACAAATATGCCGa > 1:2438813/1‑37 (MQ=255) tCGAGCAGATCACCCGCGAAACCTACAAATATGCCGa < 1:2132812/37‑1 (MQ=255) cGAGCAGATCACCCGCGAAACCTACAAATATGCCGat > 1:415509/1‑37 (MQ=255) cGAGCAGATCACCCGCGAAACCTACAAATATGCCGat < 1:7437850/37‑1 (MQ=255) cGAGCAGATCACCCGCGAAACCTACAAATATGCCGat < 1:1479334/37‑1 (MQ=255) cGAGCAGATCACCCGCGAAACCTACAAATATGCCGat < 1:1969738/37‑1 (MQ=255) cGAGCAGATCACCCGCGAAACCTACAAATATGCCGat > 1:3667859/1‑37 (MQ=255) gAGCAGATCACCCGCGAAACCTACAAATATGCCGata > 2:5996950/1‑37 (MQ=255) gAGCAGATCACCCGCGAAACCTACAAATATGCCGata > 1:1819809/1‑37 (MQ=255) gAGCAGATCACCCGCGAAACCTACAAATATGCCGata < 1:29221/37‑1 (MQ=255) gAGCAGATCACCCGCGAAACCTACAAATATGCCGata < 2:2053635/37‑1 (MQ=255) gAGCAGATCACCCGCGAAACCTACAAATATGCCGata > 2:8249992/1‑37 (MQ=255) gAGCAGATCACCCGCGAAACCTACAAATATGCCGata < 1:3867812/37‑1 (MQ=255) aGCAGATCACCCGCGAAACCTACAAATATGCCGatat < 1:6147393/37‑1 (MQ=255) aGCAGATCACCCGCGAAACCTACAAATATGCCGatat < 1:10352773/37‑1 (MQ=255) gCAGATCACCCGCGAAACCTACAAATATGCCGATATg < 2:3747182/37‑1 (MQ=255) gCAGATCACCCGCGAAACCTACAAATATGCCGATATg < 1:10297264/37‑1 (MQ=255) gCAGATCACCCGCGAAACCTACAAATATGCCGATATg < 1:8017758/37‑1 (MQ=255) cAGATCACCCGCGAAACCTACAAATATGCCGATATGc > 2:4514599/1‑37 (MQ=255) cAGATCACCCGCGAAACCTACAAATATGCCGATATGc > 2:9148829/1‑37 (MQ=255) aGATCACCCGCGAAACCTACAAATATGCCGATATGCt > 2:4009904/1‑37 (MQ=255) aGATCACCCGCGAAACCTACAAATATGCCGATATGCt < 2:4762363/37‑1 (MQ=255) aGATCACCCGCGAAACCTACAAATATGCCGATATGCt > 1:9646408/1‑37 (MQ=255) aGATCACCCGCGAAACCTACAAATATGCCGATATGCt > 1:7114289/1‑37 (MQ=255) aGATCACCCGCGAAACCTACAAATATGCCGATATGCt > 2:8376764/1‑37 (MQ=255) aGATCACCCGCGAAACCTACAAATATGCCGATATGCt > 1:4396726/1‑37 (MQ=255) gATCACCCGCGAACCCTACAAATATGCCGATATGCTg < 1:6478627/37‑1 (MQ=255) gATCACCCGCGAAACCTACAAATATGCCGATATGCTg < 1:9199363/37‑1 (MQ=255) gATCACCCGCGAAACCTACAAATATGCCGATATGCTg > 1:3397408/1‑37 (MQ=255) gATCACCCGCGAAACCTACAAATATGCCGATATGCTg < 2:6547632/37‑1 (MQ=255) aTCACCCGCGAACCCTACAAATATGCCGATATGCTgg < 1:1260432/37‑1 (MQ=255) aTCACCCGCGAAACCTACAAATATGCCGATATGCTgg < 2:897427/37‑1 (MQ=255) aTCACCCGCGAAACCTACAAATATGCCGATATGCTgg > 1:10447595/1‑37 (MQ=255) aTCACCCGCGAAACCTACAAATATGCCGATATGCTgg > 2:7435110/1‑37 (MQ=255) aTCACCCGCGAAACCTACAAATATGCCGATATGCTgg < 2:4215818/37‑1 (MQ=255) tCACCCGCGAAACCTACAAATATGCCGATATGCTGGc < 2:2882856/37‑1 (MQ=255) cACCCGCGAAACCTACAAATATGCCGATATGCTGGCg < 2:5137882/37‑1 (MQ=255) cACCCGCGAAACCTACAAATATGCCGATATGCTGGCg > 2:666223/1‑37 (MQ=255) aCCCGCGAAACCTACAAATATGCCGATATGCTGGCGa < 1:1315469/37‑1 (MQ=255) cccGCGAAACCTACAAATATGCCGATATGCTGGCGAt > 2:10904575/1‑37 (MQ=255) cccGCGAAACCTACAAATATGCCGATATGCTGGCGAt < 1:2704211/37‑1 (MQ=255) cccGCGAAACCTACAAATATGCCGATATGCTGGCGAt > 2:5408228/1‑37 (MQ=255) cccGCGAAACCTACAAATATGCCGATATGCTGGCGAt < 2:7072162/37‑1 (MQ=255) ccGCGAAACCTACAAATATGCCGATATGCTGGCGATg > 2:6406873/1‑37 (MQ=255) ccGCGAAACCTACAAATATGCCGATATGCTGGCGATg < 2:9664857/37‑1 (MQ=255) ccGCGAAACCTACAAATATGCCGATATGCTGGCGATg < 2:1288303/37‑1 (MQ=255) cgcgAAACCTACAAATATGCCGATATGCTGGCGATGt < 1:6250123/37‑1 (MQ=255) cgcgAAACCTACAAATATGCCGATATGCTGGCGATGt < 1:8603778/37‑1 (MQ=255) gcgAAACCTACAAATATGCCGATATGCTGGCGATGTc > 1:10520313/1‑37 (MQ=255) gcgAAACCTACAAATATGCCGATATGCTGGCGATGTc > 1:7876510/1‑37 (MQ=255) cgAAACCTACAAATATGCCGATATGCTGGCGATGTcc > 2:7368051/1‑37 (MQ=255) cgAAACCTACAAATATGCCGATATGCTGGCGATGTcc > 1:321832/1‑37 (MQ=255) cgAAACCTACAAATATGCCGATATGCTGGCGATGTcc < 1:4439102/37‑1 (MQ=255) gAAACCTACAAATATGCCGATATGCTGGTGATGTCCg < 1:10677937/37‑1 (MQ=255) gAAACCTACAAATATGCCGATATGCTGGCGATGTCCg > 1:5033103/1‑37 (MQ=255) gAAACCTACAAATATGCCGATATGCTGGCGATGTCCg < 2:3367504/37‑1 (MQ=255) gAAACCTACAAATATGCCGATATGCTGGCGATGTCCg > 1:9313448/1‑37 (MQ=255) aaaCCTACAAATATGCCGATATGCCGGCGATGTCCGc > 2:3970977/1‑37 (MQ=255) aaCCTACAAATATGCCGATATGCTGGCGATGgccgcc > 1:2048085/1‑37 (MQ=255) aaCCTACAAATATGCCGATATGCTGGCGATGTCCGcc > 2:2401423/1‑37 (MQ=255) aCCTACAAATATGCCGATATGCTGGCGATGTCCGCCa > 2:11233206/1‑37 (MQ=255) aCCTACAAATATGCCGATATGCTGGCGATGTCCGCCa < 2:5764958/37‑1 (MQ=255) aCCTACAAATATGCCGATATGCTGGCGATGTCCGCCa > 1:1144681/1‑37 (MQ=255) aCCTACAAATATGCCGATATGCTGGCGATGTCCGCCa < 1:9424344/37‑1 (MQ=255) ccTACAAATATGCCGATATTCTGGCGATGTCCGCCaa < 1:2669111/37‑1 (MQ=255) ccTACAAATATGCCGATATGCTGGCGATGTCCGCCaa < 2:7600847/37‑1 (MQ=255) ccTACAAATATGCCGATATGCTGGCGACGTCCGCCaa > 2:226347/1‑37 (MQ=255) cTACAAATATGCCGATATGCTGGCGATGTCCGCCaag < 2:2018622/37‑1 (MQ=255) cTACAAATATGCCGATATGCTGGCGATGTCCGCCaag < 2:10372438/37‑1 (MQ=255) cTACAAATATGCCGATATGCTGGCGATGTCCGCCaag < 2:9537334/37‑1 (MQ=255) | CAAAGACTGGACCATCGAGCAGATCACCCGCGAAACCTACAAATATGCCGATATGCTGGCGATGTCCGCCAAG > REL606/3849825‑3849897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |