New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 1278457 =168 (1.000)271 (2.020) 9/58 15.0 66.8% coding (351/1392 nt) narK nitrate/nitrite transporter
?REL606 = 1323139 NA (NA)noncoding (419/768 nt) IS1 repeat region
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1168 total aligned reads displayed.

GCTATAAGGCGTGGAGGTATCCTGCACGGCAAAACCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1278499‑1278457
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGT  <  REL606/1323139‑1323104
                                                                               
GCTATAAGGCGTGGAGGTATCCTGCACGGCAAAACCC                                            >  1:6788639/1‑37
                           cGCAAAACCCAGCCAGCGCTGGCGCGATTTAGCCCCG                 <  1:5067237/36‑1
                           cGCAAAACCCAGCCAGCGCTGGCGCGATTTAGCCCCG                 <  1:7902255/36‑1
                            GCAAAAACCAGCCAGCGCTGGCGCGATTTAGCCCCGA                <  1:7423597/37‑1
                            GCAAAAACCAGCCAGCGCTGGCGCGATTTAGCCCCGA                <  1:9400065/37‑1
                              gAAACCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA              <  1:2246554/36‑1
                              gAAAACCAGCCAGCGCTGGCGCGATTTAGCCCCGACA              <  2:7700511/36‑1
                              gAAAACCAGCCAGCGCTGGCGCGATTTAGCCCCGACA              <  2:1530860/36‑1
                              AAAACCCAGCCAGCGCTGGCGCGATTTAGCCCCGACA              <  1:10674590/37‑1
                              AAAAACCAGCCAGCGCTGGCGCGATTTAGCCCCGACA              <  1:5817819/37‑1
                               AAACCCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT             <  1:6085586/37‑1
                               AAAACCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT             <  1:4907959/37‑1
                               AAAACCAGCCAGCGCTGGCGCGATTTAGCCCCGACAT             <  2:2569979/37‑1
                                AACCCAGCCGGCGCTGGGGCTATTTAGCCCCGACATA            <  1:5294702/37‑1
                                AACCCAGCCAGCGCTGGCGCGATTTAGCCCCGACATA            <  1:10539213/37‑1
                                  aCCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC          <  2:10041835/36‑1
                                  aCCAGCCAGCGCGGGCGCGATTTAGCCCCGACATAGC          <  2:8789529/36‑1
                                  aCCACCCAGCGCTGGCGCGATTTAGCCCCGACATAGC          <  1:1000768/36‑1
                                  CCCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGC          <  1:3861511/37‑1
                                   CCAGCGAGCGGTGGCGCGATTTAGCCCCGACATAGCC         <  1:4752723/37‑1
                                   CCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCC         <  1:39731/37‑1
                                   CCAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCC         <  1:10117229/37‑1
                                    CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC        >  1:9930749/1‑37
                                    CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC        >  1:3629490/1‑37
                                    CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC        >  2:6723772/1‑37
                                    CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC        >  2:325296/1‑37
                                    CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC        >  1:7564647/1‑37
                                    CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCC        <  2:1836245/37‑1
                                    CAGCCAGCGCTGGCGCGATTGAGCCCCGACATAGCCC        >  1:4584309/1‑37
                                    CAGCCAGCGCGGGCGCGATTTAGCCCCGACATAGCCC        <  1:5435975/37‑1
                                     AGCGAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       <  2:9711600/37‑1
                                     AGCCGGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       <  1:10955872/37‑1
                                     AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       >  1:6330494/1‑37
                                     AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       <  2:2156408/37‑1
                                     AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       >  2:8483788/1‑37
                                     AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       >  2:8235542/1‑37
                                     AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       >  2:5602568/1‑37
                                     AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCC       >  1:8859031/1‑37
                                      cCCAGCGCGGGCGCGATTTAGCCCCGACATAGCCCCA      <  1:4245181/36‑1
                                      GCCGGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      <  1:9006177/37‑1
                                      GCCAGCGCTGGCGCGCTTTAGCCCCGACATAGCCCCA      <  1:3338549/37‑1
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACCTAGCCCCA      <  2:7864620/37‑1
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      <  1:10320313/37‑1
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      <  2:437730/37‑1
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      >  2:4212452/1‑37
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      >  2:3512929/1‑37
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      >  2:11203303/1‑37
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      >  1:8414152/1‑37
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      <  2:2761184/37‑1
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      <  1:2080602/37‑1
                                      GCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCA      >  2:9323290/1‑37
                                      GCCAGCGCGGGCGCGATTTAGCCCCGACATAGCCCCA      <  1:2893624/37‑1
                                      GCCAGCGCGGGCGCGATTTAGCCCCGACATAGCCCCA      <  1:4133152/37‑1
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     >  1:1861818/1‑37
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     >  2:3893671/1‑37
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     <  1:4394473/37‑1
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     >  1:9781462/1‑37
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     <  2:4831608/37‑1
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     >  1:2679383/1‑37
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     >  1:7729474/1‑37
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     <  1:11109287/37‑1
                                       CCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCAC     <  2:8625179/37‑1
                                        CAGCGNTGGCGCGATTTAGCCCCGACATAGCCCCACT    >  2:10642840/1‑37
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    <  2:6479178/37‑1
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    <  2:6879799/37‑1
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    <  2:243596/37‑1
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    <  1:7073347/37‑1
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    >  1:7184337/1‑37
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    >  2:10879265/1‑37
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    >  2:10253719/1‑37
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    >  1:6481113/1‑37
                                        CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACT    <  1:8654347/37‑1
                                        CAGCGCTGGCGCGATGTAGCCCCGACATAGCCCCACT    <  1:2475801/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCCCTG   >  1:3141621/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  2:5784710/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  1:6660622/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  2:755046/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  2:7315420/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  2:7016885/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  1:8212025/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  1:1182629/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  2:8946034/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  2:6255757/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  2:597519/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  1:9237479/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  2:5362076/37‑1
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  1:9586093/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  1:2365992/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  2:4070287/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  1:1445666/1‑37
                                         AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTG   >  1:1677990/1‑37
                                         AGCGCGGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  2:9114517/37‑1
                                         AGCGCGGGCGCGATTTAGCCCCGACATAGCCCCACTG   <  2:3017424/37‑1
                                          GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGT  <  1:553723/37‑1
                                          GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGT  >  1:6558606/1‑37
                                          GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGT  <  2:6576229/37‑1
                                          GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGT  >  2:5074572/1‑37
                                          GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGT  <  2:4606911/37‑1
                                          GCGCTGGCGCGATTTACCACCGACATAGCCGCACTGT  >  2:1292788/1‑37
                                          GCGCGGGCGGGATTGAGCCCCGACATAGCCCCACTGT  <  1:3444335/37‑1
                                                                               
GCTATAAGGCGTGGAGGTATCCTGCACGGCAAAACCCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1278499‑1278457
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccagCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGT  <  REL606/1323139‑1323104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.