| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1278457 = | 168 (1.000) | 271 (2.020) | 9/58 | 15.0 | 66.8% | coding (351/1392 nt) | narK | nitrate/nitrite transporter |
| ? | REL606 | = 1323139 | NA (NA) | noncoding (419/768 nt) | IS1 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 170 total aligned reads displayed.
GGCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGCCT > REL606/1278421‑1278493 | ggCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTc > 2:5411510/1‑37 (MQ=255)ggCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTc > 1:5896459/1‑37 (MQ=255)ggCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTc > 2:9061605/1‑37 (MQ=255)ggCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTc < 2:3545924/37‑1 (MQ=255)ggCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTc > 2:837198/1‑37 (MQ=255)ggCGTTCAGCAACGGTATTCTGATTATTCCTTGCGTc > 2:7593987/1‑37 (MQ=255) gCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTct > 1:657968/1‑37 (MQ=255) gCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTct < 1:5254365/37‑1 (MQ=255) gCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTct < 2:990589/37‑1 (MQ=255) gCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTct > 2:2609646/1‑37 (MQ=255) cGTTCAGCACCGGTATTCTGATTATTCCTTGCGTctg < 2:1897136/37‑1 (MQ=255) gTTCAGCACCGGTATTCTGATTATTCCTTGCGTctgg > 2:3290671/1‑37 (MQ=255) gTTCAGCACCGGTATTCTGATTATTCCTTGCGTctgg < 2:4944184/37‑1 (MQ=255) gTTCAGCACCGGTATTCTGATTATTCCTTGCGTctgg < 1:8453412/37‑1 (MQ=255) gTTCAGCACAGGGATTCTGATTATTCCTTGCGTctgg > 1:5062524/1‑37 (MQ=21) tCAGCACCGGTATTCTGATTATTCCTTGCGTctggct < 1:6798800/37‑1 (MQ=255) tCAGCACCGGTATTCTGATTATTCCTTGCGTctggct > 1:6246656/1‑37 (MQ=255) tCAGCACCGGTATTCTGATTATTCCTTGCGTctggct > 1:6894048/1‑37 (MQ=255) tCAGCACCGGTATTCTGATTATTCCTTGCGTctggct > 2:8260082/1‑37 (MQ=255) tCAGCACCGGTATTCTGATTATTCCTTGCGTctggct > 2:7813554/1‑37 (MQ=255) cAGCACCGGTATTCTGATTATTCCTTGCGTctggctg > 1:6568866/1‑37 (MQ=255) aGCACCGGTATTCTGATTATTCCTTGCGTctggctgg > 2:3311466/1‑37 (MQ=255) aGCACCGGTATTCTGATTATTCCTTGCGTctggctgg < 2:225587/37‑1 (MQ=255) aGCACCGGTATTCTGATTATTCCTTGCGTctggctgg > 2:7698496/1‑37 (MQ=255) gCACCGGTATTCTGATTATTCCTTGCGTCTGGCTggg > 2:4303828/1‑37 (MQ=255) gCACCGGTATTCTGATTATTCCTTGCGTCTGGCTggg > 2:6845214/1‑37 (MQ=255) cACTGGTATTCTGATTATTCCTTGCGTCTGGCTGGGt < 1:1002670/37‑1 (MQ=255) cACCGGTATTCTGATTATTCCTTGCGTCTGGCTgggg > 1:7363809/1‑36 (MQ=255) cACCGGTATTCTGATTATTCCTTGCGTCTGGCTGGGt < 1:11161536/37‑1 (MQ=255) aCCGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtt < 1:8532061/37‑1 (MQ=255) aCCGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtt < 1:2791045/37‑1 (MQ=255) aCCGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtt > 1:2594521/1‑37 (MQ=255) aCCGGCATTCTGATTATTCCTTGCGTCTGGCTGGGtt > 2:9955848/1‑37 (MQ=255) ccGGTATTCTGATTATTCCTTGCGTCTGGCTGGGttt < 2:5217339/37‑1 (MQ=255) ccGGTATTCTGATTATTCCTTGCGTCTGGCTGGGttt < 1:2043086/37‑1 (MQ=255) cGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtttt < 1:7057292/37‑1 (MQ=255) cGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtttt > 1:7167536/1‑37 (MQ=255) cGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtttt < 1:7596252/37‑1 (MQ=255) cGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtttt < 1:10435298/37‑1 (MQ=255) cGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtttt > 2:11258857/1‑37 (MQ=255) cGGTATTCTGATTATTCCTTGCGTCTGGCTGGGtttt < 2:2355069/37‑1 (MQ=255) ggTATTCTGATTATTCCTTGCGTCTGGCTGGGTTTTg > 2:5085354/1‑37 (MQ=255) ggTATTCTGATTATTCCTTGCGTCTGGCTGGGTTTTg < 1:2266602/37‑1 (MQ=255) gTATTCTGATTATTCCTTGCGTCTGGCTGGGTTTTGc < 1:4380687/37‑1 (MQ=255) tATTCTGATTATTCCTTGCGTCTGGCTGGGTTTTGcc > 2:11003928/1‑37 (MQ=255) tATTCTGATTATTCCTTGCGTCTGGCTGGGTTTTGcc > 2:9156958/1‑37 (MQ=255) tATTCTGATGATGCCTTGAGCCTGGCTGGGTTTTGcc > 2:2764093/1‑37 (MQ=21) aTTCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCg < 1:3952854/37‑1 (MQ=255) ttCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGt < 2:3857657/37‑1 (MQ=255) ttCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGt > 2:9549364/1‑37 (MQ=255) ttCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGt < 1:3184398/37‑1 (MQ=255) ttCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGt < 2:3408619/37‑1 (MQ=255) ttCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGt < 1:4184270/37‑1 (MQ=255) ttCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGt < 1:7907945/37‑1 (MQ=255) ttCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGt < 1:4983418/37‑1 (MQ=255) tCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTg > 2:6364635/1‑37 (MQ=255) cTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGc < 1:8402729/37‑1 (MQ=255) tGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCa < 1:2799319/37‑1 (MQ=255) tGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCa < 1:4918353/37‑1 (MQ=255) gATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCAg < 1:10416382/37‑1 (MQ=255) gATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCAg > 1:10571263/1‑37 (MQ=255) gATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCAg > 2:9250033/1‑37 (MQ=255) gATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCAg < 1:4283929/37‑1 (MQ=255) gATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCAg < 2:7327211/37‑1 (MQ=255) attattCCTTGCGTCTGGCTGGGTTTTGCCGTGCAgg < 1:5396986/37‑1 (MQ=255) attattCCTTGCGTCTGGCTGGGTTTTGCCGTGCAgg < 2:7318423/37‑1 (MQ=255) attattCCTTGCGTCTGGCTGGGTTTTGCCGTGCAgg < 1:810302/37‑1 (MQ=255) tattCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGAt > 2:4795657/1‑37 (MQ=255) attCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATa < 1:1511323/37‑1 (MQ=255) ttCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATAc > 2:9247759/1‑37 (MQ=255) tCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATAcc > 2:7703814/1‑37 (MQ=255) tCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATAcc < 2:10788603/37‑1 (MQ=255) tCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATAcc < 2:6195846/37‑1 (MQ=255) ccTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCt < 2:4175365/37‑1 (MQ=255) ccTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCt < 2:8921528/37‑1 (MQ=255) cTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTc < 2:4612026/37‑1 (MQ=255) cTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTc < 1:9918635/37‑1 (MQ=255) cTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTc < 1:9031043/37‑1 (MQ=255) cTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTc < 2:7111208/37‑1 (MQ=255) cTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTc > 1:6812794/1‑37 (MQ=255) ttGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTcc < 1:119770/37‑1 (MQ=255) tGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCa > 2:9803984/1‑37 (MQ=255) gCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCAc < 2:10732289/37‑1 (MQ=255) gCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCAc < 2:2553131/37‑1 (MQ=255) gCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCAc < 1:7701288/37‑1 (MQ=255) cGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACg > 2:10827863/1‑37 (MQ=255) cGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACg > 2:1059473/1‑37 (MQ=255) gTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGc > 2:1641892/1‑37 (MQ=255) gTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGc > 1:1187156/1‑37 (MQ=255) gTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGc < 1:2357979/37‑1 (MQ=255) gTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGc > 1:3120562/1‑37 (MQ=255) gTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGc > 2:8134183/1‑37 (MQ=255) gTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGc < 2:109607/37‑1 (MQ=255) gTCTGGCTGGGTTTTGCCGTGAAGGATACCTCCACGc > 1:10152297/1‑37 (MQ=255) tCTGGCTGGGTTTTGCCGTGCAGGATCCCTCCACGcc < 1:2869625/37‑1 (MQ=255) tCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGcc < 1:7680107/37‑1 (MQ=255) tCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGcc > 2:8230215/1‑37 (MQ=255) tCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGcc < 2:9710853/37‑1 (MQ=255) ctggctggGTTTTGCCGTGCAGGATACCTCCACGCCt < 1:9354602/37‑1 (MQ=255) ctggctggGTTTTGCCGTGCAGGATACCTCCACGCCt < 1:3309879/37‑1 (MQ=255) | GGCGTTCAGCACCGGTATTCTGATTATTCCTTGCGTCTGGCTGGGTTTTGCCGTGCAGGATACCTCCACGCCT > REL606/1278421‑1278493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |