| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2666985 = | 330 (1.160) | 3 (0.010) | 3/136 | 11.9 | 1.1% | coding (341/549 nt) | rimM | 16S rRNA‑processing protein |
| ? | REL606 | = 3206733 | 219 (0.850) | coding (1104/1335 nt) | garP | predicted (D)‑galactarate transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2667066‑2666985‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggctgGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGCAATGT < REL606/3206733‑3206659 aGAATTGTGAAATTGGCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGAT < 2:8836342/75‑1CGAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGAT > 1:8831366/1‑76CGAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGAT < 2:5586344/76‑1CGAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGAT > 2:4439068/1‑76 GAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATG < 1:2764712/76‑1 GAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATG > 1:963546/1‑76 GAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATG < 2:5167822/76‑1 GAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATG < 2:2260125/76‑1 AATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAACGACCTGATGG > 2:7123218/1‑76 AATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGG > 2:7714149/1‑76 AATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGG > 2:6941498/1‑76 AATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGG > 2:5815151/1‑76 AATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGG > 2:4368709/1‑76 TGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGGGCT < 1:2462562/76‑1 TGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGGGCT < 1:1520011/76‑1 CTACTACTGGAAAGACCTGATGGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAG > 2:7936462/1‑58 CTACTACTGGAAAGACCTGATGGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAG < 1:7936462/58‑1 gGATGGGTTGGCCGGTGATTTCTGACACCGTGCGGAAAGAGATTGTTGGCCGCTGCGGCGGCGTCTTTAACGTCTT < 2:957372/75‑1 TGGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGG > 2:7114445/1‑76 TGGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGG > 2:3339718/1‑76 TGGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGG > 2:6703134/1‑76 GGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGC < 1:5857252/76‑1 GGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGC < 1:2965327/76‑1 GGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGC > 1:5854521/1‑76 GGGCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGC > 2:4661269/1‑76 GCTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGGGGCCTTAACGTCTTTGGCAA > 2:166858/1‑76 CTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGCAAT > 2:4530246/1‑76 CTGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCCTCTTTAACGTCTTTGGCAAT > 2:8311683/1‑76 TGGCCGGTGATTTCTGACAGCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCTTCCTTAACGGCTTTAGCAATG > 2:3800847/1‑76 TGGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGCAATG > 2:7515237/1‑76 GGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGCAATGT > 1:9600506/1‑76 GGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGCAATGT > 2:2990648/1‑76 GGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGGCTTTTACGTCTTTGGCAATGT > 2:3137812/1‑76 GGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGGCTTTAACGTCTTTGGCAATGT > 2:7726413/1‑76 CGAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGGGACTACTACTGGAAAGACCTGATGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2667066‑2666985‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggctgGCCGGTGATTTCTGACACCGCGCCGAAAGAGATTGTTGGCCTCTGCGGCGGCGTCTTTAACGTCTTTGGCAATGT < REL606/3206733‑3206659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |