| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2666985 = | 330 (1.160) | 3 (0.010) | 3/136 | 11.9 | 1.1% | coding (341/549 nt) | rimM | 16S rRNA‑processing protein |
| ? | REL606 | = 3206733 | 219 (0.850) | coding (1104/1335 nt) | garP | predicted (D)‑galactarate transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 237 total aligned reads displayed.
AACATTGCCAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGTGTTGTTGGTG > REL606/3206658‑3206808 | aCATTGCCAAAGACGTTAAAGCCGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGcc < 2:7726413/76‑1 (MQ=255) aTTGCCAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccag < 2:4530246/76‑1 (MQ=255) gCCAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagccc > 1:5857252/1‑76 (MQ=255) ccAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagccca < 2:6703134/76‑1 (MQ=255) ccAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagccca < 2:3339718/76‑1 (MQ=255) ccAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagccca < 2:7114445/76‑1 (MQ=255) cAAAGCCGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagcccag < 1:1203953/76‑1 (MQ=255) cAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagcccag < 2:8713005/76‑1 (MQ=255) cAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagcccag < 1:2304243/76‑1 (MQ=255) aaaaACGTTAAAAGCCCCGCCCGAGGAGGCAACAATCCCCTTCGGCGCGGTGTCAGAAATCACCGGccagcccagc < 2:5987754/76‑1 (MQ=255) aaaGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccagcccagc < 2:5717564/76‑1 (MQ=255) aaaGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGccaacccagc > 2:5494546/1‑76 (MQ=255) aggACGTTAAAGACCCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAgcg < 1:474153/74‑1 (MQ=255) agaaCGTAAAAGACGCCGCCGCAGAGGCCTACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAgcg < 2:4890507/73‑1 (MQ=255) aaGACGTTAAAGCCGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAgcg < 1:636091/76‑1 (MQ=255) aaGACGTTAAAGACGCCGCCGCAGCGGCCAACAATCTCTTTCCGCACGGTGTCAGAAATCACCGGccaacccatcc > 2:957372/1‑73 (MQ=255) aaGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAgcg < 1:7430288/76‑1 (MQ=255) aaGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAgcg < 1:6962404/76‑1 (MQ=255) aaGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAgcg < 1:3550086/76‑1 (MQ=255) aaGACGTAAAAGCCGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAgcg < 1:1162474/76‑1 (MQ=255) gccGTGAAAGCCTCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCa < 2:5874149/74‑1 (MQ=255) gACGTAAAAGACTCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCa < 2:9321262/76‑1 (MQ=255) gACGTAAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCa < 2:3609043/76‑1 (MQ=255) aCGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCAc > 2:2811656/1‑76 (MQ=255) aCGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCAc > 1:5183972/1‑76 (MQ=255) gTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCa < 1:9452285/76‑1 (MQ=255) gTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCa < 1:7015621/76‑1 (MQ=255) gTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCa < 1:7136860/76‑1 (MQ=255) tAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCaaa < 2:2350321/76‑1 (MQ=255) aaGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATc > 2:1608493/1‑76 (MQ=255) aaGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATc < 2:9262025/76‑1 (MQ=255) gACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCt > 2:8591344/1‑76 (MQ=255) cgccgccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCttt < 1:8079646/76‑1 (MQ=255) cgccgccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATACttt > 2:6150941/1‑76 (MQ=255) gccgccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTg < 2:4838463/76‑1 (MQ=255) cgccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGcc > 2:2561165/1‑76 (MQ=255) cgccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGcc > 2:3413610/1‑76 (MQ=255) cgccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCACTCCAGCGCACCAAATCCTTTGcc > 2:6911634/1‑76 (MQ=255) gccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCa < 2:4396143/76‑1 (MQ=255) ccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGccca > 2:323780/1‑74 (MQ=255) ccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaa > 2:7504067/1‑76 (MQ=255) ccgcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaa < 2:31300/76‑1 (MQ=255) gcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCcaag > 2:5387391/1‑76 (MQ=255) gcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaag > 1:3456994/1‑76 (MQ=255) gcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaag < 1:1378604/76‑1 (MQ=255) gcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaag < 1:4459271/76‑1 (MQ=255) gcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaag < 1:4510958/76‑1 (MQ=255) gcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaag < 2:2187507/76‑1 (MQ=255) gcAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaag > 1:5044462/1‑76 (MQ=255) cAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaaga < 1:1108690/76‑1 (MQ=255) cAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaaga < 1:1005917/76‑1 (MQ=255) gagGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGACCAGAGCACCAAATCCTTTGCCaaagaaa > 2:4579902/1‑76 (MQ=255) agGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCCCCAAATCCCTTCCCaaaaaaag > 2:1145900/1‑76 (MQ=255) agGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCcaagaaag > 1:8501420/1‑76 (MQ=255) agGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaagaaag < 2:3769911/76‑1 (MQ=255) ccAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCa < 1:9399337/76‑1 (MQ=255) aacaaTCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAgc < 1:9112460/76‑1 (MQ=255) caaTCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCaaagaa < 1:4309341/67‑1 (MQ=255) caaTCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAgcgc > 2:2708071/1‑76 (MQ=255) caaTCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAgcgc > 1:1695333/1‑76 (MQ=255) aTCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCa < 2:1930705/76‑1 (MQ=255) aTCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCa > 2:3834723/1‑76 (MQ=255) ctctTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATc > 1:2846025/1‑76 (MQ=255) ctctTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATc > 1:1605037/1‑76 (MQ=255) ctctTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATc > 1:9253474/1‑76 (MQ=255) tCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCAt > 1:1546434/1‑76 (MQ=255) tCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCAt < 1:2236432/76‑1 (MQ=255) tCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCAt < 1:7551915/76‑1 (MQ=255) tCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCAt < 1:1122801/76‑1 (MQ=255) tCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCAt < 1:6265002/76‑1 (MQ=255) cGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATg < 1:4386189/76‑1 (MQ=255) cGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATg < 1:3053673/76‑1 (MQ=255) cGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATg < 1:7198909/76‑1 (MQ=255) cGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATg < 1:7869137/76‑1 (MQ=255) ggCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGa < 1:4283580/76‑1 (MQ=255) ggCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCACCATGa > 2:1253201/1‑76 (MQ=255) gcgGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGacca < 2:393598/76‑1 (MQ=255) gcgGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGacca < 2:7247571/76‑1 (MQ=255) cgGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGaccac > 2:9445661/1‑76 (MQ=255) cgGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGaccac > 2:4151280/1‑76 (MQ=255) cgGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGaccac > 1:3691385/1‑76 (MQ=255) ggTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGaccacc < 2:7926933/76‑1 (MQ=255) ggTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGaccacc < 2:3451136/76‑1 (MQ=255) ggTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGaccacc < 2:707227/76‑1 (MQ=255) ttCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGc < 1:9575037/75‑1 (MQ=255) cAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCgt > 1:272493/1‑76 (MQ=255) aGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATAACCACCAGCgtg < 2:2066966/76‑1 (MQ=255) gAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCgtgg > 2:6438380/1‑76 (MQ=255) aTCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGgtgt > 1:3231828/1‑76 (MQ=255) aTCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGgtgt > 1:9170818/1‑76 (MQ=255) aTCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGgtgt < 2:3214614/76‑1 (MQ=255) tCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCCTCAGCATGACCACCAGCGTGGtgtt > 1:5974641/1‑76 (MQ=255) tCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGtgtt < 2:8092523/76‑1 (MQ=255) tCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGtgtt < 2:8375457/76‑1 (MQ=255) cccGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGCCCACCAGCGTGGtgttgt < 2:6473668/75‑1 (MQ=255) aCCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGtgttgt > 2:75855/1‑76 (MQ=255) ccGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGTgttgtt < 2:9008589/76‑1 (MQ=255) gCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGTGTTGTTGgt > 1:5222494/1‑76 (MQ=255) gCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGTGTTGTTGgt > 1:5530297/1‑76 (MQ=255) ccagcccagcGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGTGTTGTTGgtg < 2:695778/76‑1 (MQ=255) | AACATTGCCAAAGACGTTAAAGACGCCGCCGCAGAGGCCAACAATCTCTTTCGGCGCGGTGTCAGAAATCACCGGCCAGCCCAGCGCACCAAATCCTTTGCCAAAGAAAGCCAGCGCCATCAGCATGACCACCAGCGTGGTGTTGTTGGTG > REL606/3206658‑3206808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |