| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4022363 = | 498 (1.760) | 4 (0.010) | 3/144 | 12.2 | 0.99% | intergenic (+22/‑133) | dsbA/yihF | periplasmic protein disulfide isomerase I/hypothetical protein |
| ? | REL606 | 4085862 = | 322 (1.180) | intergenic (+60/‑89) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4022440‑4022363‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGA > REL606/4085862‑4085936 ATGTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACG < 2:6161186/76‑1ATGTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACG < 2:5255486/76‑1 TGTCCAGCGGCAGGGCGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGG > 1:5891931/1‑76 GTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG > 2:6179934/1‑76 GTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG > 1:5742180/1‑76 GTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG > 2:8996900/1‑76 GTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG > 2:1653589/1‑76 GTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG > 2:855906/1‑76 GTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG > 2:2404601/1‑76 GTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAAACCGTGAATATTTACGGG > 2:78603/1‑76 ATAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTA > 1:2336159/1‑37 TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT > 2:740983/1‑37 TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT > 2:2336159/1‑37 TAAAAAAAACCCGTGAATATTCACGGGTTTTTTTTAT < 1:740983/37‑1 GGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGCTTTGCTTCCGTTATACTAGCGTCAGTT > 2:4980970/1‑76 GGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT < 2:2498374/76‑1 GGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT < 2:4493141/76‑1 GGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT > 1:634582/1‑76 GGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT < 2:5478924/76‑1 GGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT < 2:989224/76‑1 GGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTT < 1:1030144/76‑1 GGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTG < 1:1667955/76‑1 GGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTG < 2:7256168/76‑1 GGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTG < 2:3010046/76‑1 GTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGA > 2:330263/1‑76 GTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGA > 2:8275941/1‑76 GTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGA > 1:7231231/1‑76 GTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGA > 1:3227543/1‑76 ATGTCCAGCGGCAGGACGCATTATCAGAATGTATTTATATTTATTAAATAATAAAAAAAACCCGTGAATATTCACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4022440‑4022363‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGA > REL606/4085862‑4085936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |