| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4022363 = | 498 (1.760) | 4 (0.010) | 3/144 | 12.2 | 0.99% | intergenic (+22/‑133) | dsbA/yihF | periplasmic protein disulfide isomerase I/hypothetical protein |
| ? | REL606 | 4085862 = | 322 (1.180) | intergenic (+60/‑89) | cpxP/fieF | periplasmic protein combats stress/ferrous iron efflux protein F | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 344 total aligned reads displayed.
CTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGAT > REL606/4085787‑4085937 | cACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttt < 1:7705039/76‑1 (MQ=255) cACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttt < 2:2086350/76‑1 (MQ=255) aCGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttt < 2:9598607/76‑1 (MQ=255) aCGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttt < 2:4440913/76‑1 (MQ=255) aCGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttt < 2:8337400/76‑1 (MQ=255) cGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttttt < 1:8066677/76‑1 (MQ=255) gTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttt < 2:2458233/76‑1 (MQ=255) gTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttt > 2:5455158/1‑76 (MQ=255) ttCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttttttt > 2:4013930/1‑76 (MQ=255) gtCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttttttt < 1:2989765/75‑1 (MQ=255) cccAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTa > 2:9339174/1‑76 (MQ=255) cAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATc < 2:5235426/76‑1 (MQ=255) tagtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTc < 1:5185962/76‑1 (MQ=255) agtaACCCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCa < 1:7235565/76‑1 (MQ=255) agtaAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCa < 2:3385053/76‑1 (MQ=255) cTGTTTTCCATGCCATAGACACCAACCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCct < 2:2249886/76‑1 (MQ=255) tttttcCCTTGCCATAGACCCCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctg < 1:2756316/74‑1 (MQ=255) tGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctg < 1:4625283/76‑1 (MQ=255) tGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctg < 2:2516457/76‑1 (MQ=255) tGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctg < 1:3300160/76‑1 (MQ=255) tGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctg < 2:5141337/76‑1 (MQ=255) gtgttCCTTGCCATAGACACCATCCCTGTCTTCCCCCCCATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgc < 2:9210150/73‑1 (MQ=255) gTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgc > 2:8781421/1‑76 (MQ=255) gTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgc > 2:8641457/1‑76 (MQ=255) tttCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgctg < 2:7785581/76‑1 (MQ=255) tttCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgctg < 1:4471949/76‑1 (MQ=255) tttCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgctg < 2:8077301/76‑1 (MQ=255) tttCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgctg < 1:7130718/76‑1 (MQ=255) tttCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCctgctg < 1:9441533/76‑1 (MQ=255) ttCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCtgctgc > 1:989224/1‑76 (MQ=255) ttCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGGTTTTTTTATCCTCAATTTGCCtgctgc > 1:2498374/1‑76 (MQ=255) ccTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCtt < 1:8422876/76‑1 (MQ=255) ccTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCtt < 1:8197642/76‑1 (MQ=255) ccTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCtt < 1:3693642/76‑1 (MQ=255) ccTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCtt < 1:1654318/76‑1 (MQ=255) ccTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCtt < 1:8773305/76‑1 (MQ=255) tGCCATAGACACCATCCCTGTCTTCTCCCCCATGATGTGGGGGTTTTTTTTATCCTCCATTTCCCTGCTGCTTAAt > 1:2652/1‑76 (MQ=255) tGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:9487726/1‑76 (MQ=255) tGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:6215517/1‑76 (MQ=255) tGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:5686504/1‑76 (MQ=255) tGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:3145616/1‑76 (MQ=255) tGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:2278210/1‑76 (MQ=255) tGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:1944528/1‑76 (MQ=255) tGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGGTTTTTTTATCCTCAATTTGCCTGCTGCTTAAt > 1:481161/1‑76 (MQ=255) cATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCa > 1:6014406/1‑76 (MQ=255) aTAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCAt > 1:1549493/1‑76 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCAtt < 2:1543920/76‑1 (MQ=255) tAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCAtt < 2:2705705/76‑1 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTCATGCAttt > 1:3436879/1‑75 (MQ=255) aGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTg > 1:9106640/1‑76 (MQ=255) gACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGc > 2:6854825/1‑76 (MQ=255) gACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGc < 2:3871240/76‑1 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAg > 2:4804027/1‑76 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAg > 2:7595123/1‑76 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAg < 1:7454858/76‑1 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAg < 1:3646364/76‑1 (MQ=255) cacCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAg > 2:7692733/1‑76 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAga > 2:1206856/1‑76 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAga > 2:6659536/1‑76 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAga < 1:6740558/76‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAga < 2:2837440/76‑1 (MQ=255) acCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAga > 2:1432779/1‑76 (MQ=255) ccATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAgat > 2:3769130/1‑76 (MQ=255) cATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAgatg < 2:9033715/76‑1 (MQ=255) cATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAgatg > 2:3448303/1‑76 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAgatga < 1:8934445/76‑1 (MQ=255) aTCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAgatga > 2:9508078/1‑76 (MQ=255) cTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTg > 2:6247127/1‑76 (MQ=255) ttCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTcc > 2:3685666/1‑76 (MQ=255) ttCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTcc < 1:7387448/76‑1 (MQ=255) ttCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTcc > 2:4580825/1‑76 (MQ=255) ttCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTcc > 2:1668807/1‑76 (MQ=255) tCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTACTGCTTAATGCATTGCAGATGATTTGCTTCCg > 2:1841426/1‑76 (MQ=255) cccccACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGt < 2:5847584/76‑1 (MQ=255) cccccACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGt > 2:6373475/1‑76 (MQ=255) ccccACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGtt > 2:8986148/1‑76 (MQ=255) ccccACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGtt < 1:654551/76‑1 (MQ=255) cccACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTta > 1:6887003/1‑76 (MQ=255) cccACATGATGTGGGGGTTTTTCTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTta < 2:2597203/76‑1 (MQ=255) ccACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtat < 1:5378993/76‑1 (MQ=255) cacaTGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtata > 2:5481946/1‑76 (MQ=255) cacaTGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtata > 1:3863045/1‑76 (MQ=255) cacaTGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtata > 1:4044499/1‑76 (MQ=255) cacaTGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTtata < 2:7900720/76‑1 (MQ=255) acaTGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATAc < 1:4852733/76‑1 (MQ=255) caTGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACt > 2:609004/1‑76 (MQ=255) atgatgTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTa > 1:5882602/1‑76 (MQ=255) tgatgTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAg < 2:5008713/76‑1 (MQ=255) tgatgTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAg < 2:2998256/76‑1 (MQ=255) tgatgTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAg < 2:5586747/76‑1 (MQ=255) atgTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCg < 1:6645442/76‑1 (MQ=255) gtgGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTc > 2:8239250/1‑76 (MQ=255) gggggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAg > 1:5044027/1‑76 (MQ=255) gggggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAg > 1:7818619/1‑76 (MQ=255) ggggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGt > 2:323444/1‑76 (MQ=255) ggggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGt > 2:1371185/1‑76 (MQ=255) ggtttttttttATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGtt < 2:5977544/73‑1 (MQ=255) gggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGCTTTGCTTCCGTTATACTAGCGTCAGtt > 2:4980970/1‑76 (MQ=255) gggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGtt > 1:634582/1‑76 (MQ=255) gggTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGtt < 1:1030144/76‑1 (MQ=255) | CTCACGTTCCCAGTAGTAAACCCTGTTTTCCTTGCCATAGACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATGCATTGCAGATGATTTGCTTCCGTTATACTAGCGTCAGTTGAT > REL606/4085787‑4085937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |