| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 664687 | 3 (0.010) | 205 (0.750) | 68/144 | 0.8 | 99.1% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
| ? | REL606 | 666134 = | 1 (0.000) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 | |||||
Only 100 of 258 total aligned reads displayed.
CTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA > REL606/664613‑664761 | ctgctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTc > 2:1121648‑M1/1‑75 (MQ=255)ctgctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTc < 2:7860930‑M1/76‑2 (MQ=255) gctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcag < 1:7321681‑M1/76‑4 (MQ=255) ctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagg < 1:1036074‑M1/76‑5 (MQ=255) gctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGCAAGCAAGACACGCTCGAGCAGTTTaaggtc > 2:9544757‑M1/1‑70 (MQ=255) gctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggc > 2:3956846‑M1/1‑70 (MQ=255) gctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggc > 2:8209390‑M1/1‑70 (MQ=255) gctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggc > 2:919612‑M1/1‑70 (MQ=255) ctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggct > 2:54471‑M1/1‑69 (MQ=255) ctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggct > 2:8472794‑M1/1‑69 (MQ=255) gACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcttt > 2:5642503‑M1/1‑67 (MQ=255) aCCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttt < 1:3888472‑M1/76‑11 (MQ=255) aCCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttt < 1:8369743‑M1/76‑11 (MQ=255) ccgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcttttt > 2:3072093‑M1/1‑65 (MQ=255) cgccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttc < 1:3124963‑M1/76‑13 (MQ=255) gccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttca > 1:1413866‑M1/1‑63 (MQ=255) gccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttca > 1:813169‑M1/1‑63 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga > 1:6753748‑M1/1‑60 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga > 1:7215238‑M1/1‑60 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga > 1:6146008‑M1/1‑60 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga > 1:5325578‑M1/1‑60 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga > 1:2616092‑M1/1‑60 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga > 1:2058928‑M1/1‑60 (MQ=255) ggAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacga < 1:2011680‑M1/76‑17 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:8224884‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:9508533‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc > 2:2246717‑M1/1‑58 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:1773313‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:2916001‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:1609625‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:4372825‑M1/76‑19 (MQ=255) aaaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagc < 1:4547013‑M1/76‑19 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc > 2:6336344‑M1/1‑57 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc > 2:9462949‑M1/1‑57 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc > 2:6451994‑M1/1‑57 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc > 2:6704477‑M1/1‑57 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc > 2:8819467‑M1/1‑57 (MQ=255) aaGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagcc > 2:7170256‑M1/1‑57 (MQ=255) cgcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgct > 2:6050904‑M1/1‑51 (MQ=255) cgcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgct > 2:4860635‑M1/1‑51 (MQ=255) gcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggttttttcaggagccggcgctt < 2:1998533‑M1/76‑27 (MQ=255) gcCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctt > 1:4061711‑M1/1‑50 (MQ=255) aaaCTTATGGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcg < 2:2415393‑M1/76‑32 (MQ=255) aCTTATGGGCGTGAGCAGAAACCCCGACACGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcg < 2:7982127‑M1/76‑34 (MQ=255) ttATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtt > 2:3736370‑M1/1‑41 (MQ=255) aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttttcgccttta > 2:5200119‑M1/1‑39 (MQ=255) aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgttta > 2:3456922‑M1/1‑39 (MQ=255) aTTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAATTTcagggctttttcacgagccggcgctttaacgacttta > 2:4576120‑M1/1‑39 (MQ=255) tGGCGTGAGCAGAAACCCGGACACGCTCCAGCATTTTcagtgtttttgcaggagccggcgctttatcgcgtttaag < 2:9215009‑M1/76‑40 (MQ=255) ggCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTcagggcattttcacgagccggcgctttatcgcgtttaagc > 1:1655967‑M1/1‑36 (MQ=255) gTGAGCAGAACCCCCGACCCGCTCCAGCATTTTcagggttttttcacgagccggcgctttatcgcgtttaagcact < 1:5221927‑M1/76‑44 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacc > 2:3535141‑M1/1‑27 (MQ=255) aGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat > 1:3699733/1‑76 (MQ=255) gAACGCCCGACACGCTCCAGCGGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacct < 2:7419846‑M1/76‑51 (MQ=255) gAAAGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacct < 2:9350378‑M1/76‑51 (MQ=255) gAAAGCCCGACACGCCCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacct < 2:4163469‑M1/76‑51 (MQ=255) aacgcccGACCCGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacctg < 2:1743142‑M1/73‑52 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctg > 1:7477608‑M1/1‑25 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctg > 1:8981438‑M1/1‑25 (MQ=255) aaaGCCCGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctg < 2:2139631‑M1/76‑52 (MQ=255) cccGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgcc > 2:2911242‑M1/1‑21 (MQ=255) cccGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgcc > 2:8604331‑M1/1‑21 (MQ=255) ccGACGCGCCCAAGCAGTTTcaggtctttttcaggagccggcgctttatcgcgtttaagcactttcacctgcgcca < 1:7853269‑M1/76‑57 (MQ=255) cGACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgcccg > 2:2688475‑M1/1‑19 (MQ=255) gACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagtactttcacctgcgccagg > 2:8975009‑M1/1‑18 (MQ=255) gACACGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagg > 2:323569‑M1/1‑18 (MQ=255) acacGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccaggg > 1:2279970‑M1/1‑17 (MQ=255) cacGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggt > 2:7758983‑M1/1‑16 (MQ=255) cacGCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggt > 2:1515120‑M1/1‑16 (MQ=255) ccgCTCCAGCATTTTgagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtc < 1:8230701‑M1/75‑62 (MQ=255) ccgCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtc < 1:9278271‑M1/75‑62 (MQ=255) ccgCTCCAGCAGTTTcagggctttttcaggagccggcgctttatcgcgtttaagcactttcacctgcgccagggtc < 1:1282231‑M1/75‑62 (MQ=255) ccgCTCCAGCAGTTTcagggctttttcaggagccggcgctttatcgcgtttaagcactttcacctgcgccagggtc < 1:8819467‑M1/75‑62 (MQ=255) cGCTCCAGCAGTTTcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtca < 2:1408193‑M1/76‑63 (MQ=255) gCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcag > 2:3293915‑M1/1‑13 (MQ=255) gCTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcag > 2:3928697‑M1/1‑13 (MQ=255) cTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcagg > 2:8637882‑M1/1‑12 (MQ=255) cTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcagg > 2:8688450‑M1/1‑12 (MQ=255) cTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcagg > 2:7134540‑M1/1‑12 (MQ=255) cTCCAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcagg > 2:1263775‑M1/1‑12 (MQ=255) ccAGCAGTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggtt > 2:5862692‑M1/1‑10 (MQ=255) gctgtttcagggttttttccggagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttc < 1:6650299‑M1/73‑70 (MQ=255) gcagTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttc > 2:6781191‑M1/1‑7 (MQ=255) cagTTTcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcg > 1:5159142‑M1/1‑6 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:115339‑M1/1‑3 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:6892687‑M1/1‑3 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:4689441‑M1/1‑3 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:8641464‑M1/1‑3 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:8001449‑M1/1‑3 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:6107020‑M1/1‑3 (MQ=255) tttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgata > 1:7082483‑M1/1‑3 (MQ=255) ttcggggttttttcaggagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa < 2:6920150‑M1/76‑75 (MQ=255) ttcaggtctttgtcgcgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa < 2:850209‑M1/76‑75 (MQ=255) ttcagggttttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa < 2:5198940‑M1/76‑75 (MQ=255) ttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa < 2:804500‑M1/76‑75 (MQ=255) ttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa < 2:7082483‑M1/76‑75 (MQ=255) ttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa < 2:6169596‑M1/76‑75 (MQ=255) ttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa < 2:6136655‑M1/76‑75 (MQ=255) ttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa > 2:3811419‑M1/1‑2 (MQ=255) ttcagggctttttcacgagccggcgctttatcgcgtttaagcactttcacctgcgccagggtcaggttttcgataa > 1:5652118‑M1/1‑2 (MQ=255) | CTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA > REL606/664613‑664761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |