| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 664687 | 3 (0.010) | 205 (0.750) | 68/144 | 0.8 | 99.1% | intergenic (‑78/‑48) | gltL/insJ‑2 | ATP‑binding protein of glutamate/aspartate transport system; b0652_1/IS150 hypothetical protein |
| ? | REL606 | 666134 = | 1 (0.000) | pseudogene (354/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 | |||||
Only 100 of 258 total aligned reads displayed.
GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATC > REL606/666059‑666209 | ctgttgctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttc < 2:6142175‑M2/1‑1 (MQ=255) ctgctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAgg < 1:1036074‑M2/4‑1 (MQ=255) gctgaccgccggaaagctgcgccggaaacttattggcgtgagcagcaagcaagacacgctcgagcagtttaaggtc > 2:9544757‑M2/71‑74 (MQ=255) gctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGc > 2:919612‑M2/71‑76 (MQ=255) ctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCt > 1:7973989‑M2/70‑76 (MQ=255) ctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCt > 2:8472794‑M2/70‑76 (MQ=255) ctgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCt > 2:180919‑M2/70‑76 (MQ=255) tgaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCtt > 2:1395692‑M2/69‑76 (MQ=255) gaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttt < 2:5199254‑M2/9‑1 (MQ=255) gaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttt > 2:5642503‑M2/68‑76 (MQ=255) gaccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttt > 2:3371721‑M2/68‑76 (MQ=255) ccgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCttttt < 2:6891150‑M2/11‑1 (MQ=255) cgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTc < 1:8368256‑M2/12‑1 (MQ=255) cgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTc < 1:3124963‑M2/12‑1 (MQ=255) cgccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTc < 1:7063900‑M2/12‑1 (MQ=255) gccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCa > 1:1413866‑M2/64‑76 (MQ=255) gccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCa > 1:7823006‑M2/64‑76 (MQ=255) gccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCa < 2:3694627‑M2/13‑1 (MQ=255) gccggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCa > 2:3950296‑M2/64‑76 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:6753748‑M2/61‑76 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:6146008‑M2/61‑76 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:5325578‑M2/61‑76 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:4198787‑M2/61‑76 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:2616092‑M2/61‑76 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa > 1:2058928‑M2/61‑76 (MQ=255) ggaaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGa < 1:2011680‑M2/16‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:9047785‑M2/18‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:4547013‑M2/18‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:4372825‑M2/18‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:3929459‑M2/18‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:2916001‑M2/18‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:1773313‑M2/18‑1 (MQ=255) aaagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGc < 1:1609625‑M2/18‑1 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGTTTTTTTTCGAgcg > 1:8225335‑M2/58‑75 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc > 2:6704477‑M2/58‑76 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc > 2:7276177‑M2/58‑76 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc > 2:3268140‑M2/58‑76 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc > 2:8230701‑M2/58‑76 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc > 2:9462949‑M2/58‑76 (MQ=255) aagctgcgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGcc > 2:2199888‑M2/58‑76 (MQ=255) cgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCt > 2:2992895‑M2/52‑76 (MQ=255) cgccggaaacttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCt > 2:6050904‑M2/52‑76 (MQ=255) aaacttattggcgtgagcagaaagcccgccacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcg < 2:3153092‑M2/31‑1 (MQ=255) aaacttagtggcgtgagcagaaagcccgacacgccccggcagtttCGGGGCTTTTTCCCGAGCCGGCGCTTTATcg < 2:2735557‑M2/31‑1 (MQ=255) acttattggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATcgcg > 2:2573320‑M2/44‑76 (MQ=255) acttatgggcgtgagcagaaaccccgacacgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATcgcg < 2:7982127‑M2/33‑1 (MQ=255) ttattggcgtgagcagaaagcccgacacgctccagcaggttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGtt > 2:4543315‑M2/42‑76 (MQ=255) attggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGGCCGCGCTTTATCGCGTTTa > 2:7903623‑M2/40‑76 (MQ=255) attggcgtgagcaaaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTa < 2:5164656‑M2/37‑1 (MQ=255) tggcgtgagcagaaacccggacacgctccagcattttCAGTGTTTTTGCAGGAGCCGGCGCTTTATCGCGTTTAAg < 2:9215009‑M2/39‑1 (MQ=255) ggcgtgagcagaaagcccgacacgctccagcagtttCAGGGCATTTTCACGAGCCGGCGCTTTATCGCGTTTAAGc > 1:1655967‑M2/37‑76 (MQ=255) gtgagcagaacccccgacccgctccagcattttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACt < 1:5221927‑M2/43‑1 (MQ=255) gtgagaaaaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACt < 2:8864364‑M2/43‑1 (MQ=255) gcagaaaccccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCa < 2:8560153‑M2/47‑1 (MQ=255) tagaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAc > 2:8055664‑M2/29‑76 (MQ=255) gaacgcccgacacgctccagcagtttCGGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCt < 2:3849965‑M2/50‑1 (MQ=255) gaaagcccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCt < 2:9350378‑M2/50‑1 (MQ=255) aaaccccgacacgctccagcagtttCAGGTCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTg < 2:5533306‑M2/51‑1 (MQ=255) aaaccccgacacgctccagcagtttCAGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTg < 2:401159‑M2/51‑1 (MQ=255) agcccgacccgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTgcg < 2:376755‑M2/53‑1 (MQ=255) cccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGcc > 2:8604331‑M2/22‑76 (MQ=255) ccgacacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCa > 2:115446‑M2/21‑76 (MQ=255) acacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAggg > 1:2279970‑M2/18‑76 (MQ=255) cacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGt > 1:7456832‑M2/17‑76 (MQ=255) cacgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGt > 2:7758983‑M2/17‑76 (MQ=255) ccgctccagcagtttGAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTc < 1:3844428‑M2/61‑1 (MQ=255) ccgctccagcagtttCAGGGCTTTTTCAGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTc < 1:1282231‑M2/61‑1 (MQ=255) acgctccagcagtttCGGGGTTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTc < 1:9462949‑M2/61‑1 (MQ=255) acgctccagcagtttCGGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTc < 1:7170256‑M2/61‑1 (MQ=255) acgctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTc < 1:8185637‑M2/61‑1 (MQ=255) ctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAgg > 2:7134540‑M2/13‑76 (MQ=255) ctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAgg > 2:6438032‑M2/13‑76 (MQ=255) ctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAgg > 2:8688450‑M2/13‑76 (MQ=255) ctccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAgg > 2:7100786‑M2/13‑76 (MQ=255) cccagcagtttCAGGGCTTTTTCGGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGt < 2:7539905‑M2/65‑1 (MQ=255) ccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGtt > 2:1120897‑M2/11‑76 (MQ=255) ccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGtt > 2:208275‑M2/11‑76 (MQ=255) ccagcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGtt < 2:2279970‑M2/66‑1 (MQ=255) gctgtttCAGGGTTTTTTCCGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTc < 1:6650299‑M2/69‑1 (MQ=255) gcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTc > 2:5446149‑M2/8‑76 (MQ=255) gcagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTc > 2:5892253‑M2/8‑76 (MQ=255) cagtttCAGGGTTTTTTCAGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCg < 1:8879228‑M2/70‑1 (MQ=255) cagtttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCg > 1:5159142‑M2/7‑76 (MQ=255) cagtttCAGGGCATTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCg < 2:1427521‑M2/70‑1 (MQ=255) agtttCTGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGa > 1:7304723‑M2/6‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:6107020‑M2/4‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:115339‑M2/4‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:4689441‑M2/4‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:6892687‑M2/4‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:804500‑M2/4‑76 (MQ=255) tttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATa > 1:8499229‑M2/4‑76 (MQ=255) ttCGGGGTTTTTTCAGGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa < 2:6920150‑M2/74‑1 (MQ=255) ttCAGGGTTTTTTCGCGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa < 2:6524634‑M2/74‑1 (MQ=255) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa < 2:6169596‑M2/74‑1 (MQ=255) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa > 1:5652118‑M2/3‑76 (MQ=255) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa < 2:8641464‑M2/74‑1 (MQ=255) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa < 2:4689441‑M2/74‑1 (MQ=255) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa < 2:350866‑M2/74‑1 (MQ=255) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa < 2:1730063‑M2/74‑1 (MQ=255) ttCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATaa > 1:8729974‑M2/3‑76 (MQ=255) | GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATC > REL606/666059‑666209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |