New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2041682 =	268 (0.850)	6 (0.020)	5/128	21.2	2.2%	coding (1139/1428 nt)	wzx	O antigen translocase (Wzx)
	?	REL606	2041834 =	294 (1.090)					coding (987/1428 nt)	wzx	O antigen translocase (Wzx)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2041767‑2041682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatgcaatACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT  >  REL606/2041834‑2041908                                                                                                                                                                   GATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATA                                                                                       >  2:2272405/1‑76 GATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATA                                                                                       <  1:4325205/76‑1  ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT                                                                                      <  1:10048288/76‑1  ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT                                                                                      >  2:475953/1‑76  ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT                                                                                      <  2:5129029/76‑1  ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT                                                                                      <  2:6150983/76‑1  ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT                                                                                      <  1:6901003/76‑1  ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT                                                                                      >  1:3621600/1‑76  ATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAT                                                                                      <  1:2333099/76‑1   TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATA                                                                                     >  2:5203888/1‑76   TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATA                                                                                     <  1:4123664/76‑1   TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATA                                                                                     >  1:1766242/1‑76   TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATA                                                                                     <  2:5625359/76‑1   TCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATA                                                                                     <  2:9524671/76‑1    CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                                    <  1:2754547/76‑1    CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                                    <  1:3133764/76‑1    CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                                    >  2:2326730/1‑76    CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                                    <  2:324900/76‑1    CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                                    <  2:4160583/76‑1    CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                                    <  2:3608002/76‑1    CTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAA                                                                                    <  1:680829/76‑1     TTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAA                                                                                   <  1:8505436/76‑1     TTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAA                                                                                   <  2:9539245/76‑1     TTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATAAAAA                                                                                   <  1:4419539/76‑1      TTTTTTGGGTTT‑GAAATTCTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG                                                                                 <  2:7912044/76‑1      TTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAAT                                                                                  >  1:5155683/1‑76      TTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAAT                                                                                  >  1:7663717/1‑76      TTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAAT                                                                                  >  2:2064285/1‑76       TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG                                                                                 <  2:3443097/76‑1       TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG                                                                                 <  2:7481655/76‑1       TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG                                                                                 <  2:9772445/76‑1       TTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATG                                                                                 <  1:3892766/76‑1        TTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGC                                                                                <  1:8911640/76‑1        TTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGC                                                                                >  1:241629/1‑76        TTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGC                                                                                <  1:8006425/76‑1         TTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCA                                                                               <  2:9459371/76‑1         TTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCA                                                                               <  2:10031204/76‑1         TTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCA                                                                               <  2:8434523/76‑1          TTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAA                                                                              <  1:735021/76‑1          TTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAA                                                                              <  2:8392904/76‑1          TTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAA                                                                              >  1:4993872/1‑76           TGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT                                                                             <  2:2076462/76‑1              GTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACA                                                                          <  2:787910/76‑1                               AAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATAT                                                         <  2:5709593/76‑1                               AAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATAT                                                         <  2:3643793/76‑1                                          GACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAAT                                              <  2:4534410/76‑1                                           ACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATT                                             <  2:9788940/76‑1                                            CAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTT                                            <  2:1403636/76‑1                                                                            ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG            <  1:7912044/76‑1                                                                            ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG            <  2:2321729/76‑1                                                                            ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG            <  1:7481655/76‑1                                                                            ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG            <  2:783536/76‑1                                                                            ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG            >  1:9981418/1‑76                                                                            ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG            <  2:3831839/76‑1                                                                            ATAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATG            <  1:6264227/76‑1                                                                             TAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGG           <  2:9543533/76‑1                                                                             TAAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGG           >  1:9282070/1‑76                                                                              AAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGC          >  1:9883049/1‑76                                                                              AAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGC          <  2:8042210/76‑1                                                                              AAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGC          >  1:6960805/1‑76                                                                              AAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGC          >  1:7895089/1‑76                                                                              AAATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCAACTCACTTCCTAATAATACAGAGACTAATGGC          >  2:7150712/1‑76                                                                               AATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCT         >  2:394881/1‑76                                                                               AATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCT         >  2:4467004/1‑76                                                                               AATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCT         >  2:490098/1‑76                                                                                ATGCAATACAAAGTAGAAACAGAATATCAGTTGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT        <  1:5621977/76‑1                                                                                ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT        <  2:611501/76‑1                                                                                ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT        >  2:9045923/1‑76                                                                                ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT        <  1:10220849/76‑1                                                                                ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT        <  2:5196169/76‑1                                                                                ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT        <  1:9045923/76‑1                                                                                ATGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTT        <  2:475225/76‑1                                                                                 TGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTC       <  2:9023853/76‑1                                                                                 TGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTC       <  2:6546576/76‑1                                                                                 TGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTC       >  2:1204456/1‑76                                                                                 TGCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTC       <  2:7749252/76‑1                                                                                  GCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCG      <  1:1119382/76‑1                                                                                  GCAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCG      <  1:160829/76‑1                                                                                   CAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGA     >  1:8016591/1‑76                                                                                   CAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGA     >  1:2305112/1‑76                                                                                   CAATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGA     >  2:141654/1‑76                                                                                    AATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAG    <  2:321182/76‑1                                                                                    AATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAG    <  2:4295735/76‑1                                                                                    AATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAG    >  1:7396025/1‑76                                                                                    AATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTT                                  >  1:1620354/1‑46                                                                                    AATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTT                                  <  2:1620354/46‑1                                                                                     ATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGA   >  1:9353748/1‑76                                                                                     ATACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGA   >  2:5052101/1‑76                                                                                      TACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT  >  2:10228014/1‑76                                                                                      TACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT  <  2:3793525/76‑1                                                                                      TACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT  <  1:1612187/76‑1                                                                                      TACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT  <  1:628585/76‑1                                                                                      TACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT  <  2:7002632/76‑1                                                                                                                                                                   GATCTTTTTTTGCGTTTGGAAATACTAAAAAAGACATTGATGACAATTATTCTTGTCATTACGATGCAAATAAATATAAATGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/2041767‑2041682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataaatgcaatACAAAGTAGAAACAGAATATCAGATGTAAATTTCCACTCACTTCCTAATAATACAGAGACTAATGGCTTCGAGAT  >  REL606/2041834‑2041908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.