| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041682 = | 268 (0.850) | 6 (0.020) | 5/128 | 21.2 | 2.2% | coding (1139/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2041834 = | 294 (1.090) | coding (987/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 270 total aligned reads displayed.
ATCGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACGCA > REL606/2041607‑2041757 | aTCGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCa < 2:703376/76‑1 (MQ=255) cGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCAtt < 2:2248168/76‑1 (MQ=255) ttGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGc > 2:6100085/1‑76 (MQ=255) ttGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGc > 1:304047/1‑76 (MQ=255) ttGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGc < 1:8963210/76‑1 (MQ=255) tGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCa > 2:5476935/1‑76 (MQ=255) gATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCat > 2:9680376/1‑76 (MQ=255) aTACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatt < 1:1333577/76‑1 (MQ=255) aTACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatt > 1:8882495/1‑76 (MQ=255) tACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCattt > 1:970699/1‑76 (MQ=255) tACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCattt > 1:673876/1‑76 (MQ=255) tACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCattt > 1:3456544/1‑76 (MQ=255) aCTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCattta > 2:4194812/1‑76 (MQ=255) aCTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCattta > 1:1411301/1‑76 (MQ=255) tttCTGTCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttata > 1:7002632/1‑76 (MQ=255) tttCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttata > 1:6519119/1‑76 (MQ=255) tCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttatatt < 2:7547433/76‑1 (MQ=255) cTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttatattt > 1:8464355/1‑76 (MQ=255) cTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttatattt > 1:3626199/1‑76 (MQ=255) tGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttatattta < 2:10271686/76‑1 (MQ=255) tGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCatttatattta > 1:7326043/1‑76 (MQ=255) cTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATatttattt > 1:924925/1‑76 (MQ=255) cTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATatttattt > 1:2145279/1‑76 (MQ=255) tAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTg > 2:7880746/1‑76 (MQ=255) aaaTAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGc > 1:1807887/1‑76 (MQ=255) aataatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCa > 1:611501/1‑76 (MQ=255) ataatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCAt > 2:2735409/1‑76 (MQ=255) ataatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCAt > 1:235193/1‑76 (MQ=255) ataatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCAt < 1:2955989/76‑1 (MQ=255) taatCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATc > 1:4095048/1‑76 (MQ=255) aatCCATTTAAAACCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCg < 2:1254140/76‑1 (MQ=255) cATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAAt > 1:4125923/1‑76 (MQ=255) aTTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATg < 2:5910094/76‑1 (MQ=255) aTTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATg < 1:10168597/76‑1 (MQ=255) aTTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATg < 1:348588/76‑1 (MQ=255) aTTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATg < 2:8294286/76‑1 (MQ=255) aaaaaCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACaa < 2:5298282/76‑1 (MQ=255) aaaaaCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACaa < 2:8149264/76‑1 (MQ=255) aaaaCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAg > 2:3585557/1‑76 (MQ=255) aaaCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGa < 2:7316681/76‑1 (MQ=255) aaCCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaa > 1:5272506/1‑76 (MQ=255) ccACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaata < 1:4450735/76‑1 (MQ=255) cACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaataa < 1:1219863/76‑1 (MQ=255) cACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATCTATATTTATTTGCATCGTAATGACAAGaataa < 2:2965235/76‑1 (MQ=255) aCGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaataat > 2:4020050/1‑76 (MQ=255) aCGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGaataat < 1:4776328/76‑1 (MQ=255) cGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAAtt > 2:1013558/1‑76 (MQ=255) aaaGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGt > 2:8074086/1‑76 (MQ=255) aaGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtc > 1:2592469/1‑76 (MQ=255) aaGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtc > 2:4542322/1‑76 (MQ=255) gATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcat > 2:5223541/1‑76 (MQ=255) gATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcat > 1:10262192/1‑76 (MQ=255) gATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcat > 1:7249361/1‑76 (MQ=255) atatGAGTGTAAAACTAAACCGATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatc > 2:2696555/1‑76 (MQ=255) atatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatc < 2:1748146/76‑1 (MQ=255) atatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatc < 2:9617749/76‑1 (MQ=255) atatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatc > 1:7924486/1‑76 (MQ=255) atatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatc > 1:2766075/1‑76 (MQ=255) atatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatc > 2:160829/1‑76 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca < 2:1689311/76‑1 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca < 2:4908657/76‑1 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca > 2:512961/1‑76 (MQ=255) tatGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGtcatca > 2:3200716/1‑76 (MQ=255) gAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATg > 1:8042210/1‑76 (MQ=255) gAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATg < 1:1711911/76‑1 (MQ=255) gAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATg < 1:3912531/76‑1 (MQ=255) gtgtAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTc > 2:6264227/1‑76 (MQ=255) tgtAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCt > 1:5788605/1‑76 (MQ=255) gtAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCtt > 1:6900290/1‑76 (MQ=255) tAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCttt > 2:6518610/1‑76 (MQ=255) tAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCttt > 1:7611195/1‑76 (MQ=255) aaaaCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCtttt > 1:8202984/1‑76 (MQ=255) aaaaCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCtttt > 2:7960901/1‑76 (MQ=255) aaaaCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCtttt < 2:902450/76‑1 (MQ=255) aaCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCtttttt < 2:2513101/76‑1 (MQ=255) aCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTa > 1:1929476/1‑76 (MQ=255) aCTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTa < 2:8890891/76‑1 (MQ=255) cTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAg < 2:3350020/76‑1 (MQ=255) cTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAg > 1:2282204/1‑76 (MQ=255) cTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAg > 1:9950651/1‑76 (MQ=255) aaaCCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTa < 2:4212999/76‑1 (MQ=255) aaCCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTAt > 2:6319776/1‑76 (MQ=255) aaCCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTAt < 1:6405953/76‑1 (MQ=255) aCCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTAtt < 2:3223229/76‑1 (MQ=255) ccAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTAttt > 1:966526/1‑76 (MQ=255) aaTCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTcc < 2:8578464/76‑1 (MQ=255) aaTCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTcc < 2:3534786/76‑1 (MQ=255) aTCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCa > 2:7938343/1‑76 (MQ=255) aTCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCa < 1:543221/76‑1 (MQ=255) tCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCaa > 1:314335/1‑76 (MQ=255) tCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCaa > 2:3863420/1‑76 (MQ=255) cACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCaaa > 1:6007893/1‑76 (MQ=255) cACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCaaa < 2:1990025/76‑1 (MQ=255) cACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCaaa > 1:5373932/1‑76 (MQ=255) aCCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAAc < 2:6659652/76‑1 (MQ=255) aCCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAAc < 2:5638080/76‑1 (MQ=255) ccATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACg < 2:4116935/76‑1 (MQ=255) ccATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACg < 2:1824133/76‑1 (MQ=255) ccATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACg > 1:5053584/1‑76 (MQ=255) aTTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACGCa > 2:2076462/1‑76 (MQ=255) | ATCGTTGATACTTTCTGGCTAAATAATCCATTTAAAAACCACGAAAGATATGAGTGTAAAACTAAACCAATCACCATTGCATTTATATTTATTTGCATCGTAATGACAAGAATAATTGTCATCAATGTCTTTTTTAGTATTTCCAAACGCA > REL606/2041607‑2041757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |