| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1396823 | 344 (1.800) | 3 (0.020) | 3/144 | 19.5 | 1.2% | intergenic (‑127/+68) | fnr/ogt | DNA‑binding transcriptional dual regulator, global regulator of anaerobic growth/O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase |
| ? | REL606 | = 1397014 | 177 (0.970) | coding (393/516 nt) | ogt | O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 187 total aligned reads displayed.
AACTCCGCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTAATGC > REL606/1396939‑1397089 | aaCTCCGCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGa > 1:5274619/1‑76 (MQ=255) cTCCGCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGAtt < 2:2862645/76‑1 (MQ=255) cTCCGCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGAtt < 1:5345045/76‑1 (MQ=255) tCCGCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTc > 1:2138298/1‑76 (MQ=255) ccGCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCg < 1:3859122/76‑1 (MQ=255) gCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGAt < 2:1446528/76‑1 (MQ=255) gCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGAt > 2:4397348/1‑76 (MQ=255) gCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGAt > 2:1499736/1‑76 (MQ=255) ccTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATc < 1:1591132/76‑1 (MQ=255) cTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATcc > 1:4191054/1‑76 (MQ=255) cTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATcc > 2:2114472/1‑76 (MQ=255) tGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCg > 1:4624656/1‑76 (MQ=255) gCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGt > 1:2197378/1‑76 (MQ=255) atatCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGttt < 2:3828551/76‑1 (MQ=255) atatCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGttt < 1:4497011/76‑1 (MQ=255) atatCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGttt < 1:770344/76‑1 (MQ=255) tatCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTg < 1:4903770/76‑1 (MQ=255) atCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGc > 2:2784348/1‑76 (MQ=255) atCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGc > 1:3007688/1‑76 (MQ=255) atCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGc > 2:1886524/1‑76 (MQ=255) atCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGc > 2:2948830/1‑76 (MQ=255) ccGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGctg < 1:18278/76‑3 (MQ=255) ccGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCg > 1:1243441/1‑76 (MQ=255) cGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGGTTGCCGc > 2:3201918/1‑76 (MQ=255) gTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCAGCAc > 1:3785528/1‑76 (MQ=255) cATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGGTGGGATTCGGTCCGTTTGCCGCACCa > 2:3270668/1‑76 (MQ=255) cATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCa > 2:2638223/1‑76 (MQ=255) aTGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCaa < 1:5955639/76‑1 (MQ=255) tggtggTGTGTCGGCCAATAACCCGATGCCAGCCTTCGACGATGCATATTGTGTTCGATCCGTTTGACGCACCAAc < 2:5896670/76‑1 (MQ=255) tGGTTCCGTTTGGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAAc < 2:3589122/76‑1 (MQ=255) tGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAAc > 1:5119686/1‑76 (MQ=255) tGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAAc > 1:5165404/1‑76 (MQ=255) ggTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACg > 2:2349342/1‑76 (MQ=255) ggTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACg < 2:856363/76‑1 (MQ=255) ggTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACg < 1:6055255/76‑1 (MQ=255) gTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACgg > 1:2778253/1‑76 (MQ=255) gTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACgg > 2:1826775/1‑76 (MQ=255) tGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGc > 2:4373744/1‑76 (MQ=255) tGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGc < 1:2382174/76‑1 (MQ=255) tGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGc < 2:711574/76‑1 (MQ=255) cGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCAcg > 2:4300919/1‑76 (MQ=255) tttCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTG‑CGCCCCAACGGCAcgcgc > 1:1020696/1‑76 (MQ=255) ttCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCAcgcgc > 2:5049880/1‑76 (MQ=255) ttCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCAcgcgc > 2:2268484/1‑76 (MQ=255) ttCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCAcgcgc < 1:322595/76‑1 (MQ=255) cGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCAcgcgccg > 2:2780333/1‑76 (MQ=255) cGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCAcgcgccg > 1:1192033/1‑76 (MQ=255) ccAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCAcgcgccgcgc > 1:485327/1‑76 (MQ=255) aaTAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCa > 1:2453249/1‑76 (MQ=255) aaTAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCa > 1:5753006/1‑76 (MQ=255) aTAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAg > 2:4137801/1‑76 (MQ=255) aTAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAg > 2:4464508/1‑76 (MQ=255) aaCCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAggg > 1:401945/1‑76 (MQ=255) aaCCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAggg > 1:4087886/1‑76 (MQ=255) aCCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGggc < 2:5756807/76‑1 (MQ=255) ccGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGggcgg > 1:1262265/1‑76 (MQ=255) ccGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGggcgg < 1:2589647/76‑1 (MQ=255) gATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGcc < 2:5055414/76‑1 (MQ=255) aTGGCAAGGTTCGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGccc < 2:6160371/76‑1 (MQ=255) aTGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGccc > 2:508396/1‑76 (MQ=255) aTGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGccc > 1:6314779/1‑76 (MQ=255) ggCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCaa < 2:4568488/76‑1 (MQ=255) ggCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCaa < 1:1334893/76‑1 (MQ=255) gCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAt < 2:5502995/76‑1 (MQ=255) gCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAt > 1:2693041/1‑76 (MQ=255) gCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAt < 2:4087886/76‑1 (MQ=255) gCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAt < 1:5389218/76‑1 (MQ=255) cAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAtt > 1:5034915/1‑76 (MQ=255) cAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAtt < 1:869491/76‑1 (MQ=255) cAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAtt > 2:621356/1‑76 (MQ=255) cAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAtt > 2:1494466/1‑76 (MQ=255) cAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAAtt > 1:5472128/1‑76 (MQ=255) aaGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTg > 2:3128062/1‑76 (MQ=255) ggTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGtt < 2:1748707/76‑1 (MQ=255) ggTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGtt < 1:2869434/76‑1 (MQ=255) gTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTc < 2:4713482/76‑1 (MQ=255) tACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCa < 1:6103045/76‑1 (MQ=255) tACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCa < 1:1625584/76‑1 (MQ=255) tACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCa > 1:1440303/1‑76 (MQ=255) tACGACGATGCTGAGGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCa < 1:5859337/76‑1 (MQ=255) cgacgaTGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGc < 2:5310519/76‑1 (MQ=255) gacgaTGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGcc < 2:5744087/76‑1 (MQ=255) gacgaTGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGcc < 1:3516362/76‑1 (MQ=255) ccgaTGTTGACGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCa < 2:4783600/75‑1 (MQ=255) agaTGCTTATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAg < 2:3388068/75‑1 (MQ=255) gaTGCTGATGGGATTCGACCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGt < 2:5368392/76‑1 (MQ=255) aTGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGtt > 2:1257682/1‑76 (MQ=255) tGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTg < 2:2450128/76‑1 (MQ=255) gCTGATGGGCTTCCATCCGTTTGCCGCACCAACGTCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTgg < 2:3978576/76‑1 (MQ=255) gCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTgg < 1:970869/76‑1 (MQ=255) tGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGcc > 1:680950/1‑76 (MQ=255) tGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGcc > 2:603327/1‑76 (MQ=255) aTGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGt > 2:2745724/1‑76 (MQ=255) tGGGTTTCGTTCCGTTTTCCGCACCAACGGCCCGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTa < 2:5908003/76‑1 (MQ=255) tGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTa > 2:591785/1‑76 (MQ=255) gggTTTCGTTCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTaa < 2:6209290/76‑1 (MQ=255) gATTCGATCCGTTTGCCGCCCCACCGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTAATg < 1:1616832/76‑1 (MQ=255) aTTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTAATGc < 1:6209623/76‑1 (MQ=255) aTTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTAATGc < 2:4955717/76‑1 (MQ=255) aTTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTAATGc > 2:368530/1‑76 (MQ=255) | AACTCCGCCTGCATATCCGGTCATGGTGCCGTTTCGGCCAATAACCCGATGGCAAGGTACGACGATGCTGATGGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGGCGGCCCAATTGTTCAGCCAGTTGGCCGTAATGC > REL606/1396939‑1397089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |