Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 3549983–3551293 3552273–3551398 106–2291 87 [86] [85] 87 rhsB rhsB element core protein RshB

GGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCC  >  REL606/3549907‑3550031
                                                                           |                                                 
ggTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTgg                                                   <  2:5204820/76‑1 (MQ=255)
 gTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGc                                                  >  1:3068108/1‑76 (MQ=255)
   gACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCt                                                >  1:2376422/1‑76 (MQ=39)
   gACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCt                                                <  1:3498023/76‑1 (MQ=39)
   gACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGGATTTGTGCCCCCACCGGCGTGGCCt                                                >  1:1659571/1‑76 (MQ=11)
    aCATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGGGGCCTg                                               >  1:3820456/1‑76 (MQ=255)
    aCATGACGCAGTATGGCGGTAGCATTGTTCAGGGCTCAGCCCGGGTACGTATTGGTGCCCCCACCCGCGGGGCCTg                                               >  1:4954074/1‑76 (MQ=14)
     cATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGt                                              <  1:4568020/76‑1 (MQ=39)
      aTGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGtt                                             <  2:2017889/76‑1 (MQ=39)
      aTGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGtt                                             <  1:1715910/76‑1 (MQ=39)
      aTGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGtt                                             <  1:3845641/76‑1 (MQ=39)
        gACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCg                                           <  1:1843552/76‑1 (MQ=39)
         aCGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCgg                                          >  2:3554285/1‑76 (MQ=255)
          cGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgt                                         <  2:5050606/76‑1 (MQ=39)
           gCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgtg                                        <  2:2422545/76‑1 (MQ=39)
            cAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgtgt                                       <  2:1831838/76‑1 (MQ=39)
            cAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgggt                                       >  1:5105224/1‑76 (MQ=255)
             aGTATGGCGGTAGCATTGTTCAGGGTTCATCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGtgtg                                      <  2:3211627/76‑1 (MQ=255)
             aGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCCCCCGCGGGGCCTGTTCGGtgtg                                      >  1:3063582/1‑76 (MQ=14)
             aGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgtggg                                      >  1:5380812/1‑74 (MQ=255)
              gTATGGCGGTAGCATTGTTCAGGGTCCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGc                                     <  1:5100104/76‑1 (MQ=255)
               tATGGCGGTAGCATTGTTCAGGGTTTAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGGTCGGggtggc                                    >  1:4090494/1‑74 (MQ=14)
               tATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGcc                                    <  1:4096419/76‑1 (MQ=39)
               tATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGcc                                    <  2:619359/76‑1 (MQ=39)
                aTGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGccc                                   <  1:5204392/76‑1 (MQ=39)
                 tGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGcccc                                  >  2:3014114/1‑76 (MQ=39)
                    cGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggc                               >  1:740848/1‑76 (MQ=39)
                    cGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCCGTTCGGTGTGGCCcggc                               >  1:5358786/1‑76 (MQ=255)
                       tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCGACCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCggg                            >  2:4679486/1‑76 (MQ=255)
                       tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGGCTGTTCGGTGTGGCCcggcgga                            >  1:5718776/1‑75 (MQ=255)
                       tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggcgga                            >  2:4314039/1‑75 (MQ=39)
                       tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggcgga                            >  2:436141/1‑75 (MQ=38)
                       tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCggg                            >  2:3903334/1‑76 (MQ=40)
                        aGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggcggag                           >  2:4886561/1‑74 (MQ=25)
                        aGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggcggag                           >  1:2608768/1‑74 (MQ=25)
                         gCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggcggaga                          <  2:1038187/76‑4 (MQ=25)
                         gCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggcggaga                          <  2:1451723/76‑4 (MQ=25)
                         gCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcggcggaga                          <  2:169267/76‑4 (MQ=25)
                         gCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGt                          <  1:4351359/76‑1 (MQ=21)
                         gCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGt                          <  1:2818670/76‑1 (MQ=21)
                          cATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTg                         >  1:2503722/1‑76 (MQ=21)
                          cATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTg                         <  1:3433105/76‑1 (MQ=21)
                          cATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCCGCGGAGTg                         >  1:3149060/1‑76 (MQ=255)
                           aTTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGa                        <  2:4476369/76‑1 (MQ=21)
                           aTTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGa                        >  2:1701174/1‑76 (MQ=21)
                            ttGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGAc                       <  2:364766/76‑1 (MQ=21)
                             tGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACg                      >  1:6176506/1‑76 (MQ=21)
                              gTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGACGt                     >  1:1394645/1‑76 (MQ=255)
                              gTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACgc                     >  2:287169/1‑75 (MQ=19)
                              gTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGGGACGt                     >  1:1685037/1‑76 (MQ=255)
                               ttCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTc                    >  2:5397677/1‑76 (MQ=21)
                                 cAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCg                  <  2:5950638/76‑1 (MQ=21)
                                 cAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCg                  <  2:4549733/76‑1 (MQ=21)
                                  aGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCgg                 >  2:6318264/1‑76 (MQ=21)
                                  aGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCgg                 >  2:3410230/1‑76 (MQ=21)
                                  aGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGGTCGGTGTGCCCCGGCGGAGCGACGTCCgg                 >  2:67202/1‑76 (MQ=11)
                                    ggTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGcc               <  2:4687174/76‑1 (MQ=21)
                                    ggTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGCGACGTCCGGcc               >  1:1084866/1‑76 (MQ=255)
                                     gTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGCCCGGCCa              >  2:4021772/1‑76 (MQ=255)
                                      ttCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGCCCAt             >  1:2553612/1‑76 (MQ=255)
                                      ttCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCAt             <  2:954495/76‑1 (MQ=21)
                                      ttCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCAt             <  1:105259/76‑1 (MQ=21)
                                      ttCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCAt             >  2:6270250/1‑76 (MQ=21)
                                      ttCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCAt             <  2:3941841/76‑1 (MQ=21)
                                        cAGCCGGGGTACGTATTGTTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATcc           <  1:48054/76‑1 (MQ=255)
                                         aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCg          >  1:6235183/1‑76 (MQ=21)
                                         aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCg          <  1:3939913/76‑1 (MQ=21)
                                           ccGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGt        >  2:382132/1‑76 (MQ=21)
                                            cGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTc       >  1:5027894/1‑76 (MQ=21)
                                            cGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTc       >  1:2440375/1‑76 (MQ=21)
                                            cGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTc       <  2:4505682/76‑1 (MQ=21)
                                            cGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGAGCCCCGGCGGAGTGACGTCCGGCCATCCGGTc       >  1:5218031/1‑76 (MQ=255)
                                             ggggTACGTATTGTTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCa      <  1:5729925/76‑1 (MQ=255)
                                             ggggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCa      <  2:2636023/76‑1 (MQ=21)
                                             ggggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCa      <  1:3996889/76‑1 (MQ=21)
                                             ggggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCa      <  1:3466443/76‑1 (MQ=21)
                                             ggggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCa      >  2:5277968/1‑76 (MQ=21)
                                              gggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCaa     <  2:3845946/76‑1 (MQ=21)
                                               ggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAAt    <  1:3464694/76‑1 (MQ=21)
                                               ggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAAt    <  2:4031362/76‑1 (MQ=21)
                                               ggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAAt    <  1:1887935/76‑1 (MQ=21)
                                               ggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGGCCGGCCATCCGGTCAAt    >  1:4769284/1‑76 (MQ=255)
                                                gTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATc   <  2:589520/76‑1 (MQ=21)
                                                gTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATc   >  1:242185/1‑76 (MQ=21)
                                                gTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGGCCGGCCATCCGGTCAATc   >  1:4992565/1‑76 (MQ=255)
                                                 tACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAAttc  >  2:3600107/1‑74 (MQ=12)
                                                 tACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATcc  >  2:2289797/1‑76 (MQ=17)
                                                                           |                                                 
GGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCC  >  REL606/3549907‑3550031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: