Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	3549983–3551293	3552273–3551398	106–2291	87 [86]	[85] 87	rhsB	rhsB element core protein RshB

GCGTACAACGCGCAGGGGCTGGC‑GAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGAAA  >  REL606/3552199‑3552349                                                                             |                                                                            gCGTACACCGCGCAGGGGCGGGC‑GAACCGCTGTATACCGGATAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCa                                                                             <  2:646788/76‑1 (MQ=11) gCGTACAACGCGCGGGGGCGGGC‑GAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCa                                                                             <  1:432297/76‑1 (MQ=255)   gTACAACGCGGGGGGGCGGGC‑GAACCGCTGTATCCCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGc                                                                           <  1:1961068/76‑1 (MQ=11)        acccgcgGGGGCTGGG‑GAACCGCTTTATACCGGACAGCCTCCCCGCCGTGGAATGGCTGACTTACGGCAGCggctg                                                                      <  2:3013048/73‑1 (MQ=14)        aCGCGAGGGGGTGGGC‑GACCCGCTGTATACGGGCCGCCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCggctg                                                                      <  1:858533/76‑1 (MQ=14)         cgcgCAGGGGCTGGC‑GACCCGTTTTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCggctgg                                                                     <  2:742408/76‑1 (MQ=14)         cgcgCAGGGGCGGGG‑AAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCggctgg                                                                     <  2:2253391/76‑1 (MQ=14)             cgggggCTGGG‑GAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGt                                                                 <  2:3716090/74‑1 (MQ=255)              cggggGTGGCAGAACCGCTTTATACCGGCCACCCTCCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGt                                                                 <  1:5034980/75‑1 (MQ=14)               ggggCTGGC‑GACCCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCa                                                               <  2:6120433/76‑1 (MQ=255)               ggggCGGGC‑GAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCa                                                               <  2:1494463/76‑1 (MQ=255)               ggggCGGCC‑GAACCCCTGTATACCGGACAGCCGGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCa                                                               <  2:2165024/76‑1 (MQ=17)                gggcgggc‑GACCCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAg                                                              <  2:268139/76‑1 (MQ=255)                gggCGGGT‑GAAGCGCTTGACAGCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAg                                                              <  2:6211630/76‑1 (MQ=17)                  ggtGGC‑GACCCGCTGTTTCCCGGACACCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGc                                                            <  1:3214409/74‑1 (MQ=17)                   gtGGC‑GACCCGCTGTATCCCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCa                                                           <  2:5934274/75‑1 (MQ=255)                    tGGC‑GACCCGCTGTACACCGGCCACCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCAt                                                          <  1:1643424/76‑1 (MQ=17)                    gggC‑GACCCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCAt                                                          <  2:5017362/75‑1 (MQ=255)                    gggC‑GACCCGCGGTATCCCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCAt                                                          <  1:5984633/75‑1 (MQ=17)                      gC‑GAGCGGCTGTATGCCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGa                                                        <  2:4512586/76‑1 (MQ=17)                      gC‑GACCCGCGGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGa                                                        <  2:3174992/76‑1 (MQ=255)                       c‑GACCCGTTTTATCCGGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGaa                                                       <  2:1110249/76‑1 (MQ=17)                          atccGCTGGATCCCGGCCAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAAc                                                     <  2:2947206/74‑1 (MQ=17)                          acccGTTGTAGCCCGGCCCGCCTCCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAAc                                                     <  1:5789599/74‑1 (MQ=17)                          aaCCGCTGTATCCCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAAc                                                     <  1:5715649/76‑1 (MQ=255)                           cccGCTGTATCCCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACt                                                    <  1:5893597/75‑1 (MQ=255)                            ccGCTTTATACGGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTc                                                   <  1:2388677/76‑1 (MQ=255)                            ccGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGGCGGCAGGGATGGCACTc                                                   >  1:6218419/1‑76 (MQ=14)                               cggTATCCCGGACGGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGc                                                <  1:1504131/74‑1 (MQ=17)                               cTGTATCCCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGc                                                <  2:344783/76‑1 (MQ=255)                                   atcccGGCCAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGaca                                            <  2:1782268/73‑1 (MQ=255)                                   agcccGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGaca                                            <  1:929409/73‑1 (MQ=255)                                      ccGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGacacac                                         <  1:181585/76‑1 (MQ=255)                                      ccGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGacacac                                         <  1:5164905/76‑1 (MQ=255)                                       cGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACAcc                                        <  1:1384711/76‑1 (MQ=255)                                       cGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACAcc                                        <  2:2369678/76‑1 (MQ=255)                                        ggccAGCCGCCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCg                                       <  1:3179834/73‑1 (MQ=17)                                           cacccTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCtg                                    <  1:101475/73‑1 (MQ=255)                                            acccTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCtgg                                   <  2:2578406/74‑1 (MQ=255)                                              cttGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGGATGAAACTCGGCGACACACCGCtggtg                                 <  2:1958388/74‑1 (MQ=255)                                              ccTCCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCtggtg                                 <  2:4878810/76‑1 (MQ=255)                                               cTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGGTGGCCGGGCTGGAACTCGGGGAGACCACGCtggggg                                >  1:2915853/1‑76 (MQ=9)                                               cTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGGTGGCCGGGATGAAAATCGGCGGCACACCGCcggtgg                                >  1:1722456/1‑76 (MQ=14)                                                tccccGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGa                               <  1:5903824/74‑1 (MQ=255)                                                tccccGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGa                               <  2:2123806/74‑1 (MQ=255)                                                tGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGGAAGAAACTCGGCGACACACAGCcggtggg                               >  1:1572946/1‑75 (MQ=17)                                                tGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCCGTCCGGGGCGTAACTCGGGGGCACACCGCcgggggg                               >  1:1871254/1‑75 (MQ=12)                                                 ccccGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAg                              <  2:4068717/75‑1 (MQ=255)                                                  cccGCCGTGTAATGTCTGACTTCCGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGt                             <  1:2747384/76‑1 (MQ=17)                                                  cccGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGt                             <  2:4372517/76‑1 (MQ=255)                                                  cccGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGt                             <  2:5787130/76‑1 (MQ=255)                                                   ccgccgTGGAATGGCTTACTTTCGGCAGCTGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTa                            <  1:5907816/76‑1 (MQ=17)                                                   ccgccgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTa                            <  2:4151080/76‑1 (MQ=255)                                                   ccgccgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTa                            <  1:1535162/76‑1 (MQ=255)                                                    cgccgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTac                           <  2:640323/76‑1 (MQ=255)                                                    cgccgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTac                           <  2:646409/76‑1 (MQ=255)                                                     gccgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTaca                          <  2:323536/76‑1 (MQ=255)                                                     gccgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTaca                          <  1:3171918/76‑1 (MQ=255)                                                     gccgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTaca                          <  2:2093956/76‑1 (MQ=255)                                                       cgTGGACTGGCCCACTTACGGCAGCGGCTGGCTGTCAGGCATTAACCTCGGCGACACACCGCTGGTGGAGTACAcc                        <  1:4534861/76‑1 (MQ=17)                                                       cgTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACAcc                        <  1:778898/76‑1 (MQ=255)                                                           gAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCcgcg                    <  2:3737538/76‑1 (MQ=255)                                                            aaTGGCTGACTTACGGCAGCGGCTGGGTGTCAGGGATGAAAATCGGGGGCACACCCCCGGTGGGGGACACCCGCGa                   >  1:5917723/1‑76 (MQ=255)                                                             aTGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAAATCCGCGACACACCCCTGGGGGGGGACACCcccggc                  >  1:1987469/1‑74 (MQ=255)                                                               ggCTGCCTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCg                <  2:5990105/76‑1 (MQ=255)                                                               ggCTGACTTACGGCAGCGGCTGGCTGTCAGGGATGAAACTCGGCGACACAACGCCGGGGGGGGAAAACCCCGAccc                >  1:2516083/1‑75 (MQ=12)                                                               ggCTGACTTACGGCAGCGGCTGGCTGTCAGGGATGAAAATCGGCGACACCCCGCCGGGGGGGGAAAACCGCGAccc                >  1:5077372/1‑75 (MQ=255)                                                                  tGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCt             <  1:2549507/76‑1 (MQ=255)                                                                  tGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCt             <  2:5481179/76‑1 (MQ=255)                                                                  tGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCt             <  1:2041290/76‑1 (MQ=255)                                                                  tGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCt             <  1:384307/76‑1 (MQ=255)                                                                   gACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTg            <  2:1158521/76‑1 (MQ=255)                                                                   gACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTg            <  2:1021814/76‑1 (MQ=255)                                                                    aCTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGc           <  1:3480405/76‑1 (MQ=255)                                                                        aCGGCAGCGGCTGGCTGTCAGGCATGAAACGCGGCGACACCCCGCTGGTGGAGTACCCCCGCGACCGCCTGCACCg       <  2:5067312/76‑1 (MQ=17)                                                                         cGGCAGCGGCTGGCTGTCAGGCAAGAAACCCGGCGACAAACCCCTGGTGGAGGAAACCCGCGACCCCCCCCAccag      >  2:1711813/1‑74 (MQ=255)                                                                          ggcggcggcTGGCTGTCAGGCATGAAACTCGGCGACACCCCGCTGGGGGAGTACCCCCGCGGCCGCCTGCACCggg     <  2:3900487/76‑1 (MQ=17)                                                                          ggCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCCCCggg     >  1:3572112/1‑76 (MQ=255)                                                                          ggCAGCGGCTGGCTGTCAGGCATGAAAATCGGCGACACACCGCTGGTGGGGGACACCCGCGACCGCCTGCACCcgg     >  1:5038671/1‑76 (MQ=17)                                                                          ggCAGCGGCGGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCggg     <  1:5874639/76‑1 (MQ=255)                                                                          ggCAGCGGCGGGCGGTCAGGCAGGAACCTCGGCGACACACCGCTGGTGGAGTACACCCGCGCCCGCCTGCACCggg     <  2:2944693/76‑1 (MQ=14)                                                                           gCAGCGGTGGGGTGTCGGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGa    <  1:5798335/76‑1 (MQ=11)                                                                           gCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGa    <  1:3728114/76‑1 (MQ=255)                                                                            cAGGGGCTGTTTGTCGGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGGCCGCCTGCACCGGGaa   <  2:391057/76‑1 (MQ=11)                                                                            cAGCGGCTGGCTGTCAGTCATGAAACTCGGCGACACACCGCTGGTGGAGTACCCCCGCGACCGCCTGCACCGGGaa   <  1:2412157/76‑1 (MQ=255)                                                                             aGCGGCTGGCTGTAAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGaaa  <  1:3551434/76‑1 (MQ=255)                                                                             aGCGGCTGGCTGCCGGGAAGGAACCGCGGCGAGACCCCGCTGGTGGAGTACACCCGCCCCCGCCTGCACCGGGaaa  <  2:5529019/76‑1 (MQ=9)                                                                             |                                                                            GCGTACAACGCGCAGGGGCTGGC‑GAACCGCTGTATACCGGACAGCCTGCCCGCCGTGGAATGGCTGACTTACGGCAGCGGCTGGCTGTCAGGCATGAAACTCGGCGACACACCGCTGGTGGAGTACACCCGCGACCGCCTGCACCGGGAAA  >  REL606/3552199‑3552349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑