| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,998 | Δ6,935 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893607–3894996 | 3901932 | 6937–8326 | 85 [77] | [1] 217 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894997 | NA (NA) | 208 (1.070) +GT |
106/146 | 0.1 | 99.5% | intergenic (+27/‑161) | insK‑5/rbsD | IS150 putative transposase/predicted cytoplasmic sugar‑binding protein |
| ? | REL606 | 3901933 = | 1 (0.010) | coding (487/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
Only 100 of 223 total aligned reads displayed.
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894922‑3894997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAT > REL606/3901933‑3902007 || tggCTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:5910331/4‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT > 1:311979/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGT < 1:816855/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTT > 1:5178544/1‑76 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTG < 2:2299301/76‑1 CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTG < 2:776627/76‑1 CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCC > 1:876612/1‑76 CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCC > 2:1295977/1‑76 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCA < 2:125581/76‑1 AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCA < 1:1351396/76‑1 TTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGG < 2:2450563/76‑1 TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCACGT > 2:618333/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGA < 2:4790905/76‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGAC < 2:3776458/76‑1 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGAC > 2:3671765/1‑76 ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGAC > 2:3279662/1‑76 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACC > 2:6471909/1‑76 ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCA < 1:5058680/76‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCA > 2:6277427/1‑76 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCA < 2:6425700/76‑1 AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACG < 1:3966427/76‑1 ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGC > 1:961996/1‑76 ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGC > 1:3275462/1‑76 TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCC > 2:5093665/1‑76 CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCG > 1:3998260/1‑76 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGC > 1:2133334/1‑76 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCA > 1:1023462/1‑76 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCA > 1:2801446/1‑76 ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCA < 1:3059493/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAG < 1:2729210/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAG > 2:4245387/1‑76 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGA > 1:4914071/1‑76 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGA < 2:3201989/76‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAA > 1:2463131/1‑76 TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:4399094/76‑1 TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAAC < 1:5429128/76‑1 ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACG < 2:1814832/76‑1 TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGG < 2:4374932/76‑1 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGG > 1:6233693/1‑76 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGC > 1:6505583/1‑76 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCT > 1:751880/1‑76 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAA < 1:4394663/76‑1 GTTTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAA > 1:366718/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 2:845106/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT > 2:6625609/1‑76 TTAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAT < 2:5954573/76‑1 TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT > 2:524181/1‑76 TAACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATT < 1:4494251/76‑1 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 2:4626198/1‑76 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 1:4720649/1‑76 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG < 2:5756085/76‑1 AACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTG > 1:6435210/1‑76 ACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGG < 2:6124715/76‑1 ACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGG > 2:214193/1‑76 ACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGG > 1:4213116/1‑76 ACTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGG < 1:339564/76‑1 CTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGC > 2:5480518/1‑76 CTGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGC > 2:5890812/1‑76 TGTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCC < 1:1833740/76‑1 GTCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCC < 2:621859/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC < 2:2949256/76‑1 TCCAACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCC > 1:3792554/1‑76 CCAACTTGTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCA < 1:5820251/76‑1 AACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACC < 2:1217478/76‑1 AACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACC < 2:3912108/76‑1 ACTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCA < 2:139918/76‑1 ACTTGTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCA < 2:3154845/76‑1 CTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG < 2:2663531/76‑1 CTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG < 2:5643409/76‑1 CTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG > 1:1431303/1‑76 CTTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGACGCCAAGAACGGGGCCTAAAATTGGCCCCACCAG < 1:943427/76‑1 TTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGA > 1:6315826/1‑76 TTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGA > 2:2095939/1‑76 TTTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGA > 1:2640647/1‑76 TTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAC > 2:3900070/1‑76 TTTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAC < 2:868582/76‑1 TTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC > 1:6537455/1‑76 TTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC < 1:1578200/76‑1 TTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC > 2:5609420/1‑76 TTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC < 2:4741333/76‑1 TTTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACC > 2:4202282/1‑76 TTGGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCC > 1:2036057/1‑76 TGGGGTCAGTACAGGTTTGCCCAGGAGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCG > 2:5847261/1‑76 GGGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGG < 2:6519742/76‑1 GGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC < 1:347621/76‑1 GGGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGC < 2:1038723/76‑1 GGTCAGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCA < 2:3559421/76‑1 AGTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGC < 1:5516476/76‑1 GTACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCG < 1:4876521/76‑1 ACAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAC > 2:1747077/1‑76 CAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA < 2:6268231/76‑1 CAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA < 1:1689232/76‑1 CAGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACA > 1:4299078/1‑76 AGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA > 2:945177/1‑76 AGGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAA < 2:2503452/76‑1 GGTTTGCCCAGGTGACCGGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA < 2:3386719/76‑1 GGTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAA < 2:3764059/76‑1 GTTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAA < 1:6589450/76‑1 TTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAT > 1:2344802/1‑76 TTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAT < 1:1067837/76‑1 || TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894922‑3894997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAT > REL606/3901933‑3902007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |