| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,998 | Δ6,935 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893607–3894996 | 3901932 | 6937–8326 | 85 [77] | [1] 217 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894997 | NA (NA) | 208 (1.070) +GT |
106/146 | 0.1 | 99.5% | intergenic (+27/‑161) | insK‑5/rbsD | IS150 putative transposase/predicted cytoplasmic sugar‑binding protein |
| ? | REL606 | 3901933 = | 1 (0.010) | coding (487/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
Only 100 of 217 total aligned reads displayed.
TGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATT > REL606/3901858‑3902008 | gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtt > 2:931036‑M2/76‑76 (MQ=255)gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtt < 2:4770416‑M2/1‑1 (MQ=255)gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtt > 1:5178544‑M2/76‑76 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTg < 2:776627‑M2/3‑1 (MQ=255) ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGcc > 1:876612‑M2/72‑76 (MQ=255) caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGccc > 2:1295977‑M2/71‑76 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCa < 2:125581‑M2/7‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCa < 2:3174120‑M2/7‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCa < 1:1351396‑M2/7‑1 (MQ=255) attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTtgccccg > 1:6077325‑M2/69‑74 (MQ=255) attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAg < 2:5082494‑M2/8‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCACGt > 2:618333‑M2/67‑76 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGa > 1:715177‑M2/65‑76 (MQ=255) atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGAc > 2:3671765‑M2/64‑76 (MQ=255) tatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGAcc > 2:3771683‑M2/63‑76 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCa < 1:5058680‑M2/15‑1 (MQ=255) ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCa > 2:6277427‑M2/59‑76 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAc < 1:2904361‑M2/19‑1 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAc > 1:6316545‑M2/58‑76 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAcg > 2:4020082‑M2/57‑76 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAcg < 2:6430644‑M2/20‑1 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAcg < 1:3966427‑M2/20‑1 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAcgc > 1:961996‑M2/56‑76 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAcgc > 1:3275462‑M2/56‑76 (MQ=255) cagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCAcgccg > 1:3997779‑M2/54‑76 (MQ=255) acctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCa > 1:1023462‑M2/51‑76 (MQ=255) ctatatgcctcgtgtttaactgtctaactttttggggtcagtccaggtTTGCCCACGTGACGAGAACGCCGCCCAg > 2:4245388‑M2/49‑76 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAg < 1:4102863‑M2/28‑1 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAg > 1:6287556‑M2/49‑76 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGaa > 1:2463131‑M2/47‑76 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAAc < 1:4399094‑M2/31‑1 (MQ=255) tatgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAAc < 1:5429128‑M2/31‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACg < 1:2666931‑M2/32‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACg < 1:3082005‑M2/32‑1 (MQ=255) atgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACg < 2:1814832‑M2/32‑1 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACgg < 2:4374932‑M2/33‑1 (MQ=255) gcctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACggg < 2:2439722‑M2/34‑1 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACgggg < 2:5654894‑M2/35‑1 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGc > 1:6505583‑M2/41‑76 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGcc > 1:796462‑M2/40‑76 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCt < 2:6317643‑M2/38‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaa < 1:2016606‑M2/40‑1 (MQ=255) tgtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaa < 1:4394663‑M2/40‑1 (MQ=255) gtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaa > 1:2199239‑M2/36‑76 (MQ=255) gtttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTaaa > 1:366718‑M2/36‑76 (MQ=255) ttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt > 2:6625609‑M2/34‑76 (MQ=255) ttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt > 1:2107959‑M2/34‑76 (MQ=255) ttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt > 2:845106‑M2/34‑76 (MQ=255) ttaactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAt < 2:5954573‑M2/43‑1 (MQ=255) taactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAtt > 2:3492259‑M2/33‑76 (MQ=255) taactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAAtt > 2:524181‑M2/33‑76 (MQ=255) aactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTg < 2:5756085‑M2/45‑1 (MQ=255) aactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTg > 2:4626198‑M2/32‑76 (MQ=255) aactgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTg > 1:4720649‑M2/32‑76 (MQ=255) actgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTgg > 2:214193‑M2/31‑76 (MQ=255) actgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTgg > 2:2242231‑M2/31‑76 (MQ=255) actgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTgg < 1:339564‑M2/46‑1 (MQ=255) ctgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGc > 2:5480518‑M2/30‑76 (MQ=255) ctgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGc > 2:5890812‑M2/30‑76 (MQ=255) ctgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGc < 1:5035640‑M2/47‑1 (MQ=255) tgtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcc < 1:1833740‑M2/48‑1 (MQ=255) gtccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGccc < 2:621859‑M2/49‑1 (MQ=255) tccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc < 1:1583679‑M2/50‑1 (MQ=255) tccaactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGcccc > 1:3792554‑M2/27‑76 (MQ=255) ccaacttgttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCcca < 1:5820251‑M2/51‑1 (MQ=255) caactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccac < 2:3787239‑M2/52‑1 (MQ=255) aactttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacc < 2:1217478‑M2/53‑1 (MQ=255) actttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCccacca < 2:139918‑M2/54‑1 (MQ=255) ctttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAg < 2:2663531‑M2/55‑1 (MQ=255) ctttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAg > 1:1431303‑M2/22‑76 (MQ=255) ctttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGACGCCAAGAACGGGGCCTAAAATTGGCCCCACCAg < 1:943427‑M2/55‑1 (MQ=255) tttttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGa > 2:2095939‑M2/21‑76 (MQ=255) tttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAcc < 1:1578200‑M2/58‑1 (MQ=255) tttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAcc > 1:6453463‑M2/19‑76 (MQ=255) tttggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGAcc > 2:5609420‑M2/19‑76 (MQ=255) tggggtcagtacaggtTTGCCCAGGAGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCg > 2:5847261‑M2/17‑76 (MQ=255) ggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCgg < 2:6519742‑M2/61‑1 (MQ=255) ggggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCgg > 1:4460618‑M2/16‑76 (MQ=255) gggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGc < 1:347621‑M2/62‑1 (MQ=255) gggtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGc < 2:1038723‑M2/62‑1 (MQ=255) gtcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCAt > 1:65407‑M2/13‑76 (MQ=255) tcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATg > 2:510489‑M2/12‑76 (MQ=255) tcagtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATg < 2:4213116‑M2/65‑1 (MQ=255) agtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGc < 1:5516476‑M2/67‑1 (MQ=255) agtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGc > 1:4885913‑M2/10‑76 (MQ=255) gtacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg < 2:3907582‑M2/68‑1 (MQ=255) gtacaggcTTGCCCAGGTGACCAGCCCGCCGCCAAGAACTGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCg > 2:3217577‑M2/9‑76 (MQ=255) tacaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGa < 2:2986696‑M2/69‑1 (MQ=255) acaggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGAc > 2:1747077‑M2/7‑76 (MQ=255) caggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa > 1:4299078‑M2/6‑76 (MQ=255) caggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa < 2:6268231‑M2/71‑1 (MQ=255) caggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACa < 2:2763180‑M2/71‑1 (MQ=255) aggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaa < 2:2503452‑M2/72‑1 (MQ=255) ggtTTGCCCAGGTGACCGGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaa < 2:3386719‑M2/73‑1 (MQ=255) ggtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaa < 1:2773611‑M2/73‑1 (MQ=255) gtTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaaa < 2:6070162‑M2/74‑1 (MQ=255) ggTTGCCCAGGCGACCACCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACaaaa < 1:4497303/76‑1 (MQ=255) tTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAt > 1:2344802‑M2/2‑76 (MQ=255) tTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAt < 1:1067837‑M2/75‑1 (MQ=255) ttGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAAtt < 2:3607883/76‑1 (MQ=255) | TGGGCATATGTTTGCGCGCGTAAAGAAGGCCTGCAATACCTATGGGGATATTGATTAAAAATATCCAGTGCCAGGTTGCCCAGGTGACCAGCACGCCGCCAAGAACGGGGCCTAAAATTGGCCCCACCAGACCCGGCATGGCGACAAAATT > REL606/3901858‑3902008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |