New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	1425651 =	57 (0.240)	5 (0.020)	3/132	18.3	3.4%	coding (213/267 nt)	ynaE	predicted DNA‑binding transcriptional regulator
	?	REL606	= 1600638	234 (1.110)					intergenic (‑586/‑167)	ydfJ/ydfK	predicted transporter/predicted DNA‑binding transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1425734‑1425651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaattattaATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTTC  <  REL606/1600638‑1600564                                                                                                                                                                 AGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAG                                                                                     <  2:5647150/76‑1   ACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAA                                                                                   <  1:5482018/76‑1   ACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAA                                                                                   <  1:2072365/76‑1   ACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAA                                                                                   >  1:7628056/1‑76   ACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAA                                                                                   <  2:1899997/76‑1    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAa                                                                                  >  2:4537459/1‑75    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAT                                                                                  <  1:607278/76‑1    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAT                                                                                  <  1:6813073/76‑1    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAT                                                                                  <  2:5042577/76‑1    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAT                                                                                  <  1:7523243/76‑1    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAT                                                                                  <  1:3588952/76‑1    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAT                                                                                  <  1:3553545/76‑1    CCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAAAAAAGAAa                                                                                  >  2:3941920/1‑75    CCTATCAATACCAGAACATTGCTTGATTACATTGAAAGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAAT                                                                                  <  2:6704481/76‑1     CTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAGAATa                                                                                 >  1:337213/1‑75     CTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAAAAAAGAAat                                                                                 >  1:1097954/1‑74     CTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATT                                                                                 <  2:3918396/76‑1     CTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATT                                                                                 <  2:4222993/76‑1     CTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATT                                                                                 <  2:4318355/76‑1     CTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATT                                                                                 <  2:4857448/76‑1      TATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTA                                                                                <  2:1013285/76‑1      TATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTA                                                                                <  2:5251028/76‑1      TATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTA                                                                                <  2:995116/76‑1       ATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAGAATTAT                                                                               >  1:6969470/1‑76       ATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAGAAATAT                                                                               >  1:284936/1‑76       ATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTAT                                                                               <  1:2802999/76‑1       ATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTAT                                                                               <  2:2298946/76‑1       ATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTAT                                                                               <  2:1400402/76‑1       ATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAAAATTAT                                                                               >  1:1303647/1‑76        TCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTGACAAAAAATTATT                                                                              >  1:474314/1‑76        TCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAAAATTATT                                                                              >  1:4193508/1‑76        TCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATT                                                                              <  2:4265725/76‑1         CAATATCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTA                                                                             <  1:2447733/76‑1         CAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAGAATTATTA                                                                             >  1:5181308/1‑76         CAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAGAATTATTA                                                                             >  2:6644407/1‑76         CAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAGAATTATTA                                                                             >  1:7671111/1‑76         CAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAAAATTATTA                                                                             >  1:5067846/1‑76         CAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTA                                                                             <  2:3660932/76‑1         CAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTA                                                                             <  2:5452178/76‑1         CAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTA                                                                             <  1:3869356/76‑1          AATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAAAAATATTAA                                                                            >  1:4735934/1‑76           ATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAAAAAAAAAATATTAAa                                                                           >  2:592021/1‑75            TACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTAATG                                                                          <  2:899958/76‑1                      TTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGGTAACAAAGAATTATT                                                                              >  2:2604270/1‑62                      TTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATT                                                                              <  1:2604270/62‑1                                 CATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTAGTAATGTGTTATATATGATATAGTTGA                                                     <  2:6622265/76‑1                                          AAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTAGTAATGTGTTATATATGATATAGTTGACAATTTTTA                                            <  2:1612870/76‑1                                                                            GAATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATT          >  2:7818476/1‑76                                                                            GAATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATT          <  2:916253/76‑1                                                                            GAATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATT          <  1:1889861/76‑1                                                                            GAATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATT          <  1:5223703/76‑1                                                                             AATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTG         >  2:378831/1‑76                                                                              ATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGT        >  2:3517756/1‑76                                                                              ATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGT        >  2:6406146/1‑76                                                                              ATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGT        >  1:1797303/1‑76                                                                              ATTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGT        <  1:2578612/76‑1                                                                               TTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTC       <  1:5250329/76‑1                                                                               TTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTC       >  2:277823/1‑76                                                                               TTATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGCTGTTCTTAAAGTTCGTAGATAAACATTGTC       >  1:3145686/1‑76                                                                                TATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCG      >  2:175660/1‑76                                                                                TATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCG      <  2:5912298/76‑1                                                                                TATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTAGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCG      >  2:6354397/1‑76                                                                                 ATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGT     >  1:3127566/1‑76                                                                                 ATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGT     >  1:1374345/1‑76                                                                                 ATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGT     >  1:736901/1‑76                                                                                 ATTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGT     >  1:2897772/1‑76                                                                                  TTAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTT    >  1:1377732/1‑76                                                                                   TAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGTTAAACATTGTCGTTT   <  2:5854218/76‑1                                                                                   TAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTT   >  2:4849160/1‑76                                                                                   TAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTT   >  1:6045107/1‑76                                                                                   TAATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTT   >  1:3625678/1‑76                                                                                    AATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTTC  >  1:6886629/1‑76                                                                                    AATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTTC  >  2:7509260/1‑76                                                                                    AATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTTC  >  2:351770/1‑76                                                                                    AATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTTC  <  2:3451506/76‑1                                                                                    AATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTTC  >  1:5135668/1‑76                                                                                                                                                                 AGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/1425734‑1425651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaattattaATGTGTTATATATGATATAGTTGACGATTTTTATCTTGGGTGTTCTTAAAGTTCGTAGATAAACATTGTCGTTTC  <  REL606/1600638‑1600564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.