| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,991 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893603–3894995 | 3901987 | 6993–8385 | 11 [10] | [0] 47 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 46 (1.210) | 34/150 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901988 = | 0 (0.000) | coding (432/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894923‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAGC > REL606/3901988‑3902062 CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAC > 2:538239/1‑76CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAC > 1:946819/1‑76 TGACTCCANTTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACC > 1:1159371/1‑76 TGACTCCANTTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACC > 1:1165855/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACC > 2:610617/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACC < 1:639289/76‑1 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACC > 1:395585/1‑76 TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGATCAGTACAACC < 1:64599/76‑1 GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCC < 1:584328/76‑1 TGAATATCGGAAACATACCTATATGCCTCGTGTGTAACTGTCCAACTTTTTGGGGTCAGTANAACCCGGCATGGCG > 1:1038781/1‑76 GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGGCAGTACAACCCGGCAGGGCGA > 1:233473/1‑76 AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGAC < 2:1023375/76‑1 TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAA > 1:678910/1‑76 TCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCANCTATTTGGGGTCAGTACAACCCGGCATGGCGACAAAA < 1:1185466/76‑1 CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAAT < 1:1075227/76‑1 GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATT > 2:588690/1‑76 TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAAT < 1:409636/76‑1 AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATAC > 2:487981/1‑76 CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAAAACTGG < 1:79382/76‑1 CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGA > 1:410715/1‑76 TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAA > 1:705530/1‑76 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAG < 2:85418/76‑1 ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAG > 1:521698/1‑76 TGCCTCGTGTTTAACTGTCCAACTTCTTCGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAG < 1:184599/76‑1 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGT < 1:968532/76‑1 GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGT < 1:968541/76‑1 CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTC < 1:552928/76‑1 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAT < 2:428672/76‑1 CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCAT < 2:405060/76‑1 GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATT < 2:65191/76‑1 TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTA < 1:53029/76‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACG > 1:630462/1‑76 TTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACG < 1:588690/76‑1 TTTAACTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACG > 2:423337/1‑76 CTGTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGAT < 2:655097/76‑1 GTCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAA > 1:805444/1‑76 TCCAACTTTTTGGGGTCAGTACAACCCGGCATGGCGACAAAAATCAATACTGGAAGAAGTTCATAACGAGGATAAG < 1:1111508/76‑1 TTTTTGGGNTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGCATAAGCGCGCA > 1:1162125/1‑76 TGGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAA < 1:557808/76‑1 GGGGTCAGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAG < 1:473195/76‑1 GGGGTCACTACAACCCGGCATGGCGACAAAATTCAATACNNGAAGAAGNTCATTACGAGGATAAGCGCGCAGTAAG < 1:1191010/76‑1 GTCAGTACAACNCGGCATGGCGACAAAATTCAATTCTGGTAGACNTTCATTACGAGGATAAGGGCGTAGTAAGGCC < 1:144282/76‑1 AGTACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGT > 1:431065/1‑76 TACAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCG < 2:483605/76‑1 CAACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAG > 2:142110/1‑76 AACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAGC > 1:162720/1‑76 CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3894923‑3894996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCCGGCATGGCGACAAAATTCAATACTGGAAGAAGTTCATTACGAGGATAAGCGCGCAGTAAGGCCAGTCGAGC > REL606/3901988‑3902062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |